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[183156_at]

Description H03G16.3 /REP_DB=WormBase Gene ID /WP=CE18803 /TR=Q9XU22 /GB=CAB07226.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 6.4
(-3)
A 		35.4
(0.6)
A 		25.2
(-0.7)
A 		55.2
(3)
A 		49
B 48.2
(3)
A 		8.5
(-2.7)
A 		6.6
(-3)
A 		13.5
(-2)
A 		42
C 2.8
(-3)
A 		38.3
(-0.9)
A 		3.6
(-3)
A 		102.7
(3)
P 		100
avr 19.1
(-2) 		27.4
(-0.9) 		11.8
(-3) 		57.1
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 4.6
(-2.8)
A 		33.4
(1.7)
A 		20.9
(-0.2)
A 		40
(2.8)
A 		41.3
(3)
A 		3.4
(-3)
A 		38
B 17.6
(-0.5)
A 		32.7
(3)
A 		16.2
(-0.8)
A 		6.6
(-3)
A 		26.5
(1.6)
A 		27.2
(1.7)
A 		26
C 10.3
(-2.1)
A 		39.6
(3)
A 		4.9
(-3)
A 		38.2
(2.8)
A 		6.5
(-2.7)
A 		7.6
(-2.5)
A 		35
avr 10.8
(-3) 		35.2
(3) 		14
(-2.2) 		28.3
(1.3) 		24.8
(0.4) 		12.7
(-2.5) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 2.3
(-3)
A 		7.7
(2.6)
A 		6.6
(1.4)
A 		8.1
(3)
A 		6
B 15.4
(3)
A 		2.1
(-2.7)
A 		1.5
(-3)
A 		2.9
(-2.4)
A 		14
C 0.9
(-3)
A 		11
(0.7)
A 		1.2
(-2.9)
A 		17.3
(3)
P 		16
avr 6.2
(-0) 		6.9
(0.6) 		3.1
(-3) 		9.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.8
(-3)
A 		11.9
(2.7)
A 		4.5
(-1.1)
A 		10.2
(1.8)
A 		12.5
(3)
A 		0.8
(-3)
A 		12
B 6.1
(-0.1)
A 		10.9
(3)
A 		3.9
(-1.6)
A 		1.7
(-3)
A 		10.7
(2.9)
A 		10.2
(2.5)
A 		9
C 3.8
(-1.6)
A 		12.1
(3)
A 		1.2
(-3)
A 		7.7
(0.6)
A 		2.1
(-2.5)
A 		2.5
(-2.3)
A 		11
avr 3.6
(-2.7) 		11.6
(3) 		3.2
(-3) 		6.5
(-0.6) 		8.4
(0.7) 		4.5
(-2.1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183156_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17619
Sequence Type Exemplar sequence
Representative Public ID H03G16.3 NCBI
Target Description H03G16.3 /REP_DB=WormBase Gene ID /WP=CE18803 /TR=Q9XU22 /GB=CAB07226.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000037553 ENSEMBL cdna:SNAP chromosome:CEL140:X:15063931:15067100:1 None
GENEFINDER00000037559 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15063931:15067100:1 None
H03G16.3 ENSEMBL cdna:pseudogene chromosome:CEL140:X:15063931:15067100:1 gene:H03G16.3 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15063930-15067203(+) 100.0 100.0
Public Domain and Genome References
Ensembl H03G16.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T23039 hypothetical protein H03G16.3 - Caenorhabditis elegans 0.0
blast AAC48142 Hypothetical protein C41D11.7 [Caenorhabditis elegans] ref|NP_491374.2| C41D11.7 [Caenorhabditis elegans] 1.0E-100
blast AAC48142 Hypothetical protein C41D11.7 [Caenorhabditis elegans] ref|NP_491374.2| C41D11.7 [Caenorhabditis elegans] 2.0E-92
blast CAE70248 Hypothetical protein CBG16740 [Caenorhabditis briggsae] 4.0E-60
blast CAE70248 Hypothetical protein CBG16740 [Caenorhabditis briggsae] 6.0E-58
Sequence
Target Sequence 
>C. ELEGANS:183156_AT
gattgttttgacactcacgttggagacgttgataaaattgtaggaaaagagtttgacgtt
gtcattttcactatggttcgatcaaacccaaaattggacatgggaaaagctggtgacccc
cgtcgacttcatgtcattattacaaaagcaaagaaacatttcatgttcattggaaacgga
tttctccttgccgaaaacaacatgaatcatattaataaactgtttaagtatgttctgttc
cattccaaatttcaattatatttttcttttcaactttcgagatcagaaattcttgcagca
ttttcaatagcccttgtatcggaattcgcactaatcgtttcaacccgaacaaaatgttcg
gtcaagatgaacatgtccaaaactcagttgaaatgtgctacgggcataagtttaagtact
tcattgagtacagtaacgatggcaaaatgctcgattggtgcaaacagaaaaacgaagaaa
gagatcaagaaattagacaactcaacaattgttgaataccattctgaaagtaataggcat
ctccgtcgtcagaattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTGTTTTGACACTCACGTTGGAG 319 427 1336 Antisense
TTTGACGTTGTCATTTTCACTATGG 615 667 1387 Antisense
CATGGGAAAAGCTGGTGACCCCCGT 242 207 1434 Antisense
CCCCGTCGACTTCATGTCATTATTA 358 261 1453 Antisense
TTGGAAACGGATTTCTCCTTGCCGA 82 709 1505 Antisense
TGTTCTGTTCCATTCCAAATTTCAA 637 561 1566 Antisense
CTTGCAGCATTTTCAATAGCCCTTG 170 217 1627 Antisense
TAGCCCTTGTATCGGAATTCGCACT 588 651 1643 Antisense
GAATTCGCACTAATCGTTTCAACCC 440 323 1657 Antisense
AACTCAGTTGAAATGTGCTACGGGC 136 141 1716 Antisense
TAGGCATCTCCGTCGTCAGAATTAT 634 653 1869 Antisense
Sequence Source Affymetrix Proprietary Database