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[183154_at]

Description Y12A6A.1 /REP_DB=WormBase Gene ID /WP=CE19031 /TR=Q9XXJ4 /GB=CAA19444.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 83      4grp_highest_8_8 > 04      4grp_high_8_8 > 38      6grp_highest_nonorm > 64      6grp_total > 74      4grp_total > 33      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 506
1 2 3 4 range
A 420.2
(-3)
P 		925.7
(3)
P 		761.6
(1.1)
P 		786.7
(1.4)
P 		506
B 509.1
(-3)
P 		805.3
(2.1)
P 		854.3
(3)
P 		754.8
(1.3)
P 		345
C 443.2
(-3)
P 		770.1
(3)
P 		744.4
(2.5)
P 		718.2
(2)
P 		327
avr 457.5
(-3) 		833.7
(3) 		786.8
(2.3) 		753.2
(1.7) 		376

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 736
1 2 3 4 5 6 range
A 531.2
(-3)
P 		527.5
(-3)
P 		802.1
(0.7)
P 		876.6
(1.7)
P 		975.2
(3)
P 		862.5
(1.5)
P 		448
B 464.5
(-3)
P 		505.5
(-2.6)
P 		981.8
(2.3)
P 		1052.7
(3)
P 		922.9
(1.7)
P 		938
(1.8)
P 		588
C 474.3
(-3)
P 		525.5
(-2.6)
P 		743.3
(-0.8)
P 		1200.2
(3)
P 		669.2
(-1.4)
P 		1067.6
(1.9)
P 		726
avr 490
(-3) 		519.5
(-2.7) 		842.4
(0.8) 		1043.2
(3) 		855.8
(1) 		956
(2.1) 		553
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 144
1 2 3 4 range
A 153
(-0.4)
P 		201
(3)
P 		199.1
(2.9)
P 		115.2
(-3)
P 		86
B 162.3
(-2.8)
P 		198.9
(3)
P 		198
(2.9)
P 		160.9
(-3)
P 		38
C 146.7
(-1.9)
P 		221.4
(1.3)
P 		259.5
(3)
P 		121.1
(-3)
P 		138
avr 154
(-1.5) 		207.1
(2.2) 		218.9
(3) 		132.4
(-3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 97.9
(-3)
P 		187.6
(-0.3)
P 		174.7
(-0.7)
P 		222.3
(0.8)
P 		294.3
(3)
P 		210
(0.4)
P 		196
B 161.6
(-3)
P 		168.3
(-2.8)
P 		238.4
(-0.8)
P 		278.8
(0.3)
P 		374.9
(3)
P 		349.8
(2.3)
P 		213
C 175.8
(-2.5)
P 		160.3
(-3)
P 		189.2
(-2.1)
P 		241.4
(-0.5)
P 		216.5
(-1.3)
P 		357.4
(3)
P 		197
avr 145.1
(-3) 		172.1
(-2) 		200.8
(-0.9) 		247.5
(0.8) 		295.2
(2.6) 		305.7
(3) 		161
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183154_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17611
Sequence Type Exemplar sequence
Representative Public ID Y12A6A.1 NCBI
Target Description Y12A6A.1 /REP_DB=WormBase Gene ID /WP=CE19031 /TR=Q9XXJ4 /GB=CAA19444.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077881(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077881 NCBI Caenorhabditis elegans Y12A6A.1 (Y12A6A.1) mRNA, complete cds. 11/11 None
SNAP00000038634 ENSEMBL cdna:SNAP chromosome:CEL140:X:13620105:13621641:-1 11/11 None
GENEFINDER00000038637 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:13620105:13621641:-1 11/11 None
Y12A6A.1 ENSEMBL cdna:known chromosome:CEL140:X:13619869:13621647:-1 gene:Y12A6A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13620104-13621641(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y12A6A.1
Entrez Gene 181482 Entrez gene
SwissProt Q9XXJ4 EMBL-EBI
WormBase CE19031 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19444 Hypothetical protein Y12A6A.1 [Caenorhabditis elegans] ref|NP_510282.1| Y12A6A.1 [Caenorhabditis elegans] 1.0E-116
blast CAE63109 Hypothetical protein CBG07404 [Caenorhabditis briggsae] 2.0E-77
blast CAB01420 Hypothetical protein F15B9.5 [Caenorhabditis elegans] ref|NP_506254.1| F15B9.5 [Caenorhabditis elegans] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:183154_AT
catcatcttgtcactagccacagtttttgtattatgtacagaaagcgactatactgtaga
aacatatccgaacccgaaaagaggtggctacaaggagtgcggtctgcgcagttctggcct
tgtttgcgatccatatgagacgctcagtgaatcagagcgctaccgtatcaacaatcagct
tatcaatttcgttactaaaactgaagagggtggcaacacgttctgctccaaaaaaggaac
cgatgcaatgtttgtgattatgaacaaggcatcccaggagtttgctgacaaccttcgaaa
acactggagcacaattgatacacaatgcggacgttttggacttcttgttctctcgcttga
tgaccgacaaatcttcggatctttcgatgagcgatcgccaataaatatggctcaactcca
agctatcatcgctacagaagaaaaccacatcaaaacaggagcgtataccaccgcggtaac
aaacatcctgaaagaagtagcagcttcaatgactccacaaaagggcgtcacaactacaac
accagcatcttcaacaaagtattcaccagctcaattgtcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCATCTTGTCACTAGCCACAGTT 372 213 24 Antisense
GAGGTGGCTACAAGGAGTGCGGTCT 171 401 104 Antisense
GGCCTTGTTTGCGATCCATATGAGA 637 543 139 Antisense
GAATCAGAGCGCTACCGTATCAACA 24 329 172 Antisense
AAGAGGGTGGCAACACGTTCTGCTC 297 155 227 Antisense
GGCATCCCAGGAGTTTGCTGACAAC 250 537 291 Antisense
TTGTTCTCTCGCTTGATGACCGACA 336 707 368 Antisense
GCTCAACTCCAAGCTATCATCGCTA 26 303 433 Antisense
ACCACCGCGGTAACAAACATCCTGA 448 83 490 Antisense
CTACAACACCAGCATCTTCAACAAA 385 227 557 Antisense
AAAGTATTCACCAGCTCAATTGTCC 260 123 579 Antisense
Sequence Source Affymetrix Proprietary Database