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[183153_at] 7TM chemoreceptor, srg family

Description F21F8.1 /REP_DB=WormBase Gene ID /WP=CE09537 /TR=O01538 /GB=AAC47993.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 24      6grp_cgc > 44      6grp_cgc_sub > 02      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 2.2
(-3)
A 		5.3
(-2.3)
A 		29.1
(3)
A 		25.2
(2.1)
A 		27
B 4.1
(-3)
A 		45.7
(1.6)
A 		37.2
(0.7)
A 		58.2
(3)
P 		54
C 23
(3)
A 		10
(-1.8)
A 		6.8
(-3)
A 		11.8
(-1.1)
A 		16
avr 9.8
(-3) 		20.3
(-0.1) 		24.4
(1) 		31.7
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 8.9
(-2.1)
A 		5.5
(-2.6)
A 		39.1
(3)
A 		3.3
(-3)
A 		10.9
(-1.7)
A 		5.3
(-2.7)
A 		36
B 35.4
(3)
A 		19.1
(0.1)
A 		16.6
(-0.3)
A 		2.3
(-2.9)
A 		5.3
(-2.4)
A 		1.7
(-3)
A 		34
C 15.4
(-1.7)
A 		48.6
(3)
A 		14.6
(-1.8)
A 		6.4
(-3)
A 		7.3
(-2.9)
A 		19.3
(-1.2)
A 		42
avr 19.9
(1.7) 		24.4
(3) 		23.4
(2.7) 		4
(-3) 		7.8
(-1.9) 		8.8
(-1.6) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.8
(-3)
A 		1.2
(-2.6)
A 		7.6
(3)
A 		3.7
(-0.4)
A 		7
B 1.3
(-3)
A 		11.3
(2.4)
A 		8.6
(0.9)
A 		12.4
(3)
P 		11
C 7.6
(3)
A 		2.9
(-2)
A 		2.4
(-2.6)
A 		2
(-3)
A 		6
avr 3.2
(-3) 		5.1
(0.8) 		6.2
(3) 		6
(2.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.6
(-2.4)
A 		2
(-2.1)
A 		8.5
(3)
A 		0.8
(-3)
A 		3.3
(-1.1)
A 		1.3
(-2.6)
A 		8
B 12.3
(3)
A 		6.4
(-0)
A 		4
(-1.3)
A 		0.6
(-3)
A 		2.1
(-2.2)
A 		0.6
(-3)
A 		12
C 5.7
(-1)
A 		14.8
(3)
A 		3.7
(-1.9)
A 		1.3
(-3)
A 		2.4
(-2.5)
A 		6.5
(-0.7)
A 		14
avr 6.5
(1.9) 		7.7
(3) 		5.4
(1) 		0.9
(-3) 		2.6
(-1.5) 		2.8
(-1.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183153_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12002
Sequence Type Exemplar sequence
Representative Public ID F21F8.1 NCBI
Target Description F21F8.1 /REP_DB=WormBase Gene ID /WP=CE09537 /TR=O01538 /GB=AAC47993.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072739 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-33) (srg-33) mRNA, complete cds. 11/11 None
GENEFINDER00000029346 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8295370:8296106:1 10/11 None
F21F8.1 ENSEMBL cdna:known chromosome:CEL140:V:8294654:8296106:1 gene:F21F8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029330 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8294654-8296107(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-33
Ensembl F21F8.1
Entrez Gene 184786 Entrez gene
SwissProt O01538 EMBL-EBI
WormBase CE09537 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC47993 Serpentine receptor, class g (gamma) protein 33 [Caenorhabditis elegans] ref|NP_505140.1| Serpentine Receptor, class G (gamma) family member (srg-33) [Caenorhabditis elegans] sp|O01538|SRG33_CAEEL Serpentine receptor class gamma-33 (Protein srg-33) 1.0E-154
blast AAC47993 Serpentine receptor, class g (gamma) protein 33 [Caenorhabditis elegans] ref|NP_505140.1| Serpentine Receptor, class G (gamma) family member (srg-33) [Caenorhabditis elegans] sp|O01538|SRG33_CAEEL Serpentine receptor class gamma-33 (Protein srg-33) 7.0E-90
blast CAE66082 Hypothetical protein CBG11299 [Caenorhabditis briggsae] 7.0E-86
blast CAE66082 Hypothetical protein CBG11299 [Caenorhabditis briggsae] 2.0E-41
blast CAA97334 Hypothetical protein T21C9.7 [Caenorhabditis elegans] ref|NP_505716.2| Serpentine Receptor, class G (gamma) family member (srg-32) [Caenorhabditis elegans] 6.0E-40
blast CAA97334 Hypothetical protein T21C9.7 [Caenorhabditis elegans] ref|NP_505716.2| Serpentine Receptor, class G (gamma) family member (srg-32) [Caenorhabditis elegans] 5.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505140.1 7 6-28,41-63,91-113,134-156,176-198,219-241,256-278
F21F8.1 7 6-28,41-63,91-113,134-156,176-198,219-241,256-278
GENEFINDER00000029346 4 7-29,49-71,91-113,128-150
Sequence
Target Sequence 
>C. ELEGANS:183153_AT
aaggcatggaatcgtgcgttcccgttcgtaataattttggtcatcgttttgccagttccg
tttacatatacaattctaccaagttggacttattatgcttacaccgaaactatggactgt
tacagtacatctagtagtgtggaccgagggtttctctataatcagcttctaccatttatg
gcaacaatcactattgcaacggcaattattaacatcgcttcattctacaaactgacatgt
atgacttataagatttcaatcgctgagaggaatcttcttttcatgagtggatcattgttt
attgttcaactcctggcagatgtgaacactacactgaatcgacttgtggtaaatgacaat
aacaaattcggtatctggtctcagattgcagtgactcttcttccttatatcagtgatggg
ttgacattgattcatccatggatgtttcttgctttcagcacaaaggctcgccgttgtttc
atgctaatgtattttccaaaatatgcgaaggttgccgttacagcaaccaattctgtccgc
ttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGCATGGAATCGTGCGTTCCCGT 134 161 388 Antisense
GTTTTGCCAGTTCCGTTTACATATA 533 447 433 Antisense
GTAGTGTGGACCGAGGGTTTCTCTA 697 421 521 Antisense
GTTTCTCTATAATCAGCTTCTACCA 43 451 537 Antisense
TTAACATCGCTTCATTCTACAAACT 260 683 596 Antisense
GTTTATTGTTCAACTCCTGGCAGAT 626 449 684 Antisense
AACAAATTCGGTATCTGGTCTCAGA 629 135 748 Antisense
GGTCTCAGATTGCAGTGACTCTTCT 392 503 764 Antisense
GACTCTTCTTCCTTATATCAGTGAT 632 373 780 Antisense
CATGGATGTTTCTTGCTTTCAGCAC 707 209 824 Antisense
TACAGCAACCAATTCTGTCCGCTTT 702 643 906 Antisense
Sequence Source Affymetrix Proprietary Database