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[183152_at]

Description C03E10.1 /REP_DB=WormBase Gene ID /WP=CE15581 /TR=O17557 /GB=CAB03820.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 7.2
(-2.6)
A 		3.2
(-3)
A 		3.7
(-3)
A 		67.1
(3)
A 		64
B 43
(1.1)
A 		17.6
(-1.7)
A 		6.5
(-3)
A 		59.7
(3)
A 		53
C 40
(-0.8)
A 		21.3
(-2.4)
A 		13.6
(-3)
A 		86.1
(3)
P 		73
avr 30.1
(-0.9) 		14
(-2.4) 		7.9
(-3) 		71
(3) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 30.7
(2.9)
A 		16.3
(-0.1)
A 		26.6
(2)
A 		2.1
(-3)
A 		31.3
(3)
A 		6.8
(-2)
A 		29
B 5.3
(-2.3)
A 		26.4
(3)
A 		14
(-0.1)
A 		6.8
(-1.9)
A 		25.7
(2.8)
A 		2.4
(-3)
A 		24
C 2.2
(-2.9)
A 		40.5
(3)
A 		4.4
(-2.5)
A 		1.3
(-3)
A 		4.5
(-2.5)
A 		14.3
(-1)
A 		39
avr 12.7
(-0.7) 		27.7
(3) 		15
(-0.1) 		3.4
(-3) 		20.5
(1.2) 		7.8
(-1.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 2.6
(-1.7)
A 		0.7
(-3)
A 		1
(-2.8)
A 		9.8
(3)
A 		9
B 13.7
(3)
A 		4.3
(-1.6)
A 		1.5
(-3)
A 		12.7
(2.5)
A 		12
C 13.2
(2.2)
A 		6.1
(-2.1)
A 		4.7
(-3)
A 		14.5
(3)
P 		10
avr 9.8
(1.5) 		3.7
(-2.2) 		2.4
(-3) 		12.3
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 5.7
(0.5)
A 		5.8
(0.6)
A 		5.8
(0.6)
A 		0.5
(-3)
A 		9.4
(3)
A 		1.7
(-2.2)
A 		9
B 1.8
(-2.4)
A 		8.8
(2)
A 		3.4
(-1.4)
A 		1.8
(-2.4)
A 		10.4
(3)
A 		0.9
(-3)
A 		10
C 0.8
(-2.8)
A 		12.4
(3)
A 		1.1
(-2.6)
A 		0.3
(-3)
A 		1.5
(-2.4)
A 		4.8
(-0.8)
A 		12
avr 2.8
(-1.6) 		9
(3) 		3.4
(-1.1) 		0.9
(-3) 		7.1
(1.6) 		2.5
(-1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183152_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12852
Sequence Type Exemplar sequence
Representative Public ID C03E10.1 NCBI
Target Description C03E10.1 /REP_DB=WormBase Gene ID /WP=CE15581 /TR=O17557 /GB=CAB03820.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073466(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073466 NCBI Caenorhabditis elegans C03E10.1 (C03E10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000008162 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11293967:11295253:1 11/11 None
C03E10.1 ENSEMBL cdna:known chromosome:CEL140:V:11293776:11295157:1 gene:C03E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11293775-11295157(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03E10.1
Entrez Gene 182161 Entrez gene
SwissProt O17557 EMBL-EBI
WormBase CE15581 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03820 Hypothetical protein C03E10.1 [Caenorhabditis elegans] ref|NP_505867.1| C03E10.1 [Caenorhabditis elegans] 1.0E-145
blast CAB03820 Hypothetical protein C03E10.1 [Caenorhabditis elegans] ref|NP_505867.1| C03E10.1 [Caenorhabditis elegans] 1.0E-110
blast CAE75211 Hypothetical protein CBG23160 [Caenorhabditis briggsae] 8.0E-55
blast CAE75212 Hypothetical protein CBG23161 [Caenorhabditis briggsae] 4.0E-54
blast CAE75212 Hypothetical protein CBG23161 [Caenorhabditis briggsae] 5.0E-54
blast CAE75211 Hypothetical protein CBG23160 [Caenorhabditis briggsae] 7.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505867.1 7 4-26,38-60,70-92,113-132,142-164,195-217,221-238
C03E10.1 7 4-26,38-60,70-92,113-132,142-164,195-217,221-238
GENEFINDER00000008162 5 33-55,76-95,105-127,167-189,193-215
Sequence
Target Sequence 
>C. ELEGANS:183152_AT
ggatatttagcacccattggagaattttctacttccgcaggaatatttattttggtcttc
gaacgatacgcatcagtttactttccgtcatttcgcttgtcttctgcctacaaaatttgg
tttttgcaaataattttaattcattttggagcactttgtgtgtttgtatatttgcaaaaa
atagacaagtcagcttttgctttattgagtagcgtctttgcagtttcagttatttacctt
tcttcgtttttgctcgagattttcctatacttctctgcaaaaaatcgttactacaaaacc
atcggtcagatgtgtttgacaaagcgatatatgttgtcggaaagttttgaattgtgtcaa
agttcgttcaatgctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATTTAGCACCCATTGGAGAAT 103 511 235 Antisense
GAGAATTTTCTACTTCCGCAGGAAT 409 391 254 Antisense
TGGTCTTCGAACGATACGCATCAGT 555 551 287 Antisense
GCATCAGTTTACTTTCCGTCATTTC 374 305 304 Antisense
CGCTTGTCTTCTGCCTACAAAATTT 88 255 328 Antisense
GACAAGTCAGCTTTTGCTTTATTGA 364 365 418 Antisense
GCAGTTTCAGTTATTTACCTTTCTT 72 309 454 Antisense
TACCTTTCTTCGTTTTTGCTCGAGA 704 649 469 Antisense
GATTTTCCTATACTTCTCTGCAAAA 595 429 492 Antisense
TCGTTACTACAAAACCATCGGTCAG 466 599 519 Antisense
GTGTCAAAGTTCGTTCAATGCTATT 289 485 588 Antisense
Sequence Source Affymetrix Proprietary Database