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[183151_at]

Description F42G8.7 /REP_DB=WormBase Gene ID /WP=CE17066 /TR=O44508 /GB=AAB92073.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 31      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 133
1 2 3 4 range
A 128.4
(3)
P 		30
(-3)
A 		33.6
(-2.8)
A 		57.4
(-1.3)
A 		98
B 144.3
(3)
P 		11.6
(-3)
A 		15.6
(-2.8)
A 		74.6
(-0.2)
A 		133
C 143.5
(3)
P 		48
(-2.3)
A 		35.7
(-3)
A 		87.3
(-0.1)
A 		108
avr 138.7
(3) 		29.9
(-2.9) 		28.3
(-3) 		73.1
(-0.6) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 137.9
(3)
P 		77.3
(-0.5)
A 		75.3
(-0.6)
P 		70.3
(-0.9)
M 		38.4
(-2.8)
A 		34.6
(-3)
A 		103
B 99.3
(3)
P 		79.6
(1.6)
P 		54.1
(-0.1)
P 		48.7
(-0.5)
P 		28.5
(-1.9)
A 		12.9
(-3)
A 		86
C 111.6
(3)
P 		88.6
(1.6)
P 		44.8
(-1)
A 		60.5
(-0.1)
A 		18.6
(-2.6)
A 		12
(-3)
A 		100
avr 116.3
(3) 		81.8
(0.9) 		58.1
(-0.6) 		59.8
(-0.5) 		28.5
(-2.5) 		19.8
(-3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 46.8
(3)
P 		6.5
(-3)
A 		8.8
(-2.7)
A 		8.4
(-2.7)
A 		40
B 46
(3)
P 		2.9
(-3)
A 		3.6
(-2.9)
A 		15.9
(-1.2)
A 		43
C 47.5
(3)
P 		13.8
(-2.8)
A 		12.4
(-3)
A 		14.7
(-2.6)
A 		35
avr 46.8
(3) 		7.7
(-3) 		8.3
(-2.9) 		13
(-2.2) 		39

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 25.4
(2.3)
P 		27.5
(3)
A 		16.4
(-0.5)
P 		17.8
(-0)
M 		11.6
(-2)
A 		8.4
(-3)
A 		19
B 34.5
(3)
P 		26.5
(1.4)
P 		13.1
(-1.3)
P 		12.9
(-1.4)
P 		11.6
(-1.6)
A 		4.8
(-3)
A 		30
C 41.4
(3)
P 		27
(0.7)
P 		11.4
(-1.8)
A 		12.2
(-1.7)
A 		6
(-2.7)
A 		4
(-3)
A 		37
avr 33.8
(3) 		27
(1.5) 		13.6
(-1.3) 		14.3
(-1.2) 		9.7
(-2.1) 		5.7
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183151_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9077
Sequence Type Exemplar sequence
Representative Public ID F42G8.7 NCBI
Target Description F42G8.7 /REP_DB=WormBase Gene ID /WP=CE17066 /TR=O44508 /GB=AAB92073.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068956(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068956 NCBI Caenorhabditis elegans F42G8.7 (F42G8.7) mRNA, complete cds. 11/11 None
SNAP00000028274 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8127715:8128890:1 11/11 None
GENEFINDER00000028284 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8125375:8128890:1 11/11 None
F42G8.7 ENSEMBL cdna:known chromosome:CEL140:IV:8125635:8128890:1 gene:F42G8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8125640-8128896(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G8.7
Entrez Gene 185676 Entrez gene
SwissProt O44508 EMBL-EBI
WormBase CE17066 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB92073 Hypothetical protein F42G8.7 [Caenorhabditis elegans] ref|NP_501357.1| F42G8.7 [Caenorhabditis elegans] 0.0
blast CAE58415 Hypothetical protein CBG01546 [Caenorhabditis briggsae] 1.0E-143
blast CAE58415 Hypothetical protein CBG01546 [Caenorhabditis briggsae] 1.0E-127
blast AAB92073 Hypothetical protein F42G8.7 [Caenorhabditis elegans] ref|NP_501357.1| F42G8.7 [Caenorhabditis elegans] 8.0E-92
blast CAE58416 Hypothetical protein CBG01547 [Caenorhabditis briggsae] 1.0E-91
blast CAE58416 Hypothetical protein CBG01547 [Caenorhabditis briggsae] 9.0E-83
Sequence
Target Sequence 
>C. ELEGANS:183151_AT
ggttggttgattgctcaatccgagcaaacaagcggatgtcctgaaagcttctgtcttgta
gatgtcaatgataatgacgtttatcataaatctcatatcgcgaatgcttatcattatgat
cgaataatgctctctcgtcttgtatacgaaacaccaattcttgcacaggcacgagccgaa
ggacatcttttagttatttatggacgagaagctgaacgagttgctaaagttttatttcaa
cggggatttaagactgttttactgaaaggaaacactgcacaattcaaggaacaatatcca
tgtctcctggagccttcaattgacttcgtaaagctcaaagaaatttatgaaaagaaaaag
aattctgtatttggaggtcgtctgtggagaagtacttcagcttcacgaatcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGGTTGATTGCTCAATCCGAGC 328 505 1234 Antisense
GATGTCCTGAAAGCTTCTGTCTTGT 379 409 1268 Antisense
ATCTCATATCGCGAATGCTTATCAT 258 33 1323 Antisense
ATGATCGAATAATGCTCTCTCGTCT 450 45 1349 Antisense
TGCTCTCTCGTCTTGTATACGAAAC 550 581 1361 Antisense
GAAACACCAATTCTTGCACAGGCAC 123 357 1381 Antisense
CAGGCACGAGCCGAAGGACATCTTT 370 209 1399 Antisense
ACAATATCCATGTCTCCTGGAGCCT 429 115 1524 Antisense
CCTGGAGCCTTCAATTGACTTCGTA 442 265 1539 Antisense
GAATTCTGTATTTGGAGGTCGTCTG 657 323 1593 Antisense
AAGTACTTCAGCTTCACGAATCAAA 583 157 1623 Antisense
Sequence Source Affymetrix Proprietary Database