[Home] | [Total List]

[183150_s_at]

Description C50F7.8 /REP_DB=WormBase Gene ID /WP=CE04246 /TR=Q18753 /GB=AAA83303.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 49.3
(-0)
P 		85.5
(3)
A 		54.2
(0.4)
A 		14
(-3)
A 		72
B 46.7
(3)
A 		7.4
(-3)
A 		36.2
(1.4)
A 		7.8
(-2.9)
A 		39
C 44.7
(-1.7)
M 		53.2
(1.2)
A 		40.7
(-3)
A 		58.6
(3)
A 		18
avr 46.9
(2.5) 		48.7
(3) 		43.7
(1.6) 		26.8
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 62.6
(3)
P 		17.6
(-1.7)
A 		7.3
(-2.8)
A 		12.2
(-2.3)
A 		20.9
(-1.4)
A 		5.1
(-3)
A 		58
B 40.9
(3)
A 		27.2
(0.7)
A 		8.2
(-2.5)
A 		5.3
(-3)
A 		23.7
(0.1)
A 		9.7
(-2.3)
A 		36
C 27.4
(0.2)
A 		6.9
(-2.7)
A 		18.4
(-1.1)
A 		10.8
(-2.1)
A 		48
(3)
A 		4.4
(-3)
A 		44
avr 43.6
(3) 		17.2
(-1.3) 		11.3
(-2.2) 		9.4
(-2.5) 		30.9
(1) 		6.4
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 17.9
(2.7)
P 		18.6
(3)
A 		14.2
(1.4)
A 		2.1
(-3)
A 		17
B 14.9
(3)
A 		1.8
(-3)
A 		8.4
(0)
A 		1.7
(-3)
A 		13
C 14.8
(2.4)
M 		15.3
(3)
A 		14.2
(1.8)
A 		9.9
(-3)
A 		5
avr 15.9
(3) 		11.9
(0.9) 		12.3
(1.1) 		4.6
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 11.5
(3)
P 		6.3
(-0)
A 		1.6
(-2.8)
A 		3.1
(-1.9)
A 		6.3
(-0)
A 		1.2
(-3)
A 		10
B 14.2
(3)
A 		9.1
(0.6)
A 		2
(-2.7)
A 		1.4
(-3)
A 		9.6
(0.8)
A 		3.6
(-2)
A 		13
C 10.1
(0.7)
A 		2.1
(-2.7)
A 		4.7
(-1.6)
A 		2.2
(-2.7)
A 		15.5
(3)
A 		1.5
(-3)
A 		14
avr 11.9
(3) 		5.8
(-0.7) 		2.8
(-2.6) 		2.2
(-2.9) 		10.5
(2.1) 		2.1
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183150_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9049
Sequence Type Exemplar sequence
Representative Public ID C50F7.8 NCBI
Target Description C50F7.8 /REP_DB=WormBase Gene ID /WP=CE04246 /TR=Q18753 /GB=AAA83303.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) C50F7.8
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C50F7.8 C50F7.8 /REP_DB=WormBase Gene ID /WP=CE04246 /TR=Q18753 /GB=AAA83303.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068862 11/11 Negative Strand Matching Probes A 
SNAP00000024186 11/11 Negative Strand Matching Probes None
GENEFINDER00000024199 11/11 Negative Strand Matching Probes None
C50F7.5 11/11 Negative Strand Matching Probes R A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7727268-7727604(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:183150_S_AT
atgcccatggtgtccatgatgtccatgatcatggtgatgtggtggccctggtggcctggc
gggcgtcttgttgggggtccaggtggacctggcgggcgccttgttgggggtcctggaggt
cctggagggcgtctggtgggaggccctggcggtcctggcggtcctggtgggtcagatgga
gatggctcatctgatggatctactggccctggagatggtggttcagaaggtttaggatct
tctgatggatctactggtcccggaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCCCATGGTGTCCATGATGTCCA 438 41 13 Antisense
ATCATGGTGATGTGGTGGCCCTGGT 44 21 40 Antisense
GTTGGGGGTCCAGGTGGACCTGGCG 701 431 82 Antisense
CCTGGAGGGCGTCTGGTGGGAGGCC 557 265 133 Antisense
GCGGTCCTGGTGGGTCAGATGGAGA 494 293 170 Antisense
GGTGGGTCAGATGGAGATGGCTCAT 386 499 178 Antisense
GCTCATCTGATGGATCTACTGGCCC 387 301 197 Antisense
CTACTGGCCCTGGAGATGGTGGTTC 672 225 212 Antisense
GATGGTGGTTCAGAAGGTTTAGGAT 570 397 226 Antisense
GGTTTAGGATCTTCTGATGGATCTA 591 505 241 Antisense
CTGATGGATCTACTGGTCCCGGAGA 174 239 254 Antisense
Sequence Source Affymetrix Proprietary Database