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[183149_at]

Description R03H4.6 /REP_DB=WormBase Gene ID /WP=CE07409 /TR=Q21689 /GB=AAC48105.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 04      4grp_total > 33      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 21.1
(-3)
A 		83.6
(2.6)
P 		88.1
(3)
A 		79.9
(2.3)
A 		67
B 30.9
(-3)
A 		96.3
(3)
P 		85.8
(2)
A 		63.4
(-0)
P 		65
C 30
(-3)
A 		93.8
(2.5)
A 		68.9
(0.4)
P 		99.1
(3)
P 		69
avr 27.3
(-3) 		91.2
(3) 		80.9
(2) 		80.8
(2) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 120
1 2 3 4 5 6 range
A 85
(2)
P 		42.6
(-0.6)
A 		101
(3)
P 		70.7
(1.1)
P 		84
(1.9)
A 		4.9
(-3)
A 		96
B 124.8
(3)
P 		71.4
(-0.5)
A 		54.6
(-1.6)
A 		84.1
(0.3)
P 		49.6
(-1.9)
A 		33.5
(-3)
A 		91
C 95.1
(3)
P 		68.5
(0.5)
P 		80.3
(1.6)
M 		76.1
(1.2)
A 		55.5
(-0.8)
A 		31.9
(-3)
A 		63
avr 101.6
(3) 		60.8
(-0.1) 		78.6
(1.2) 		77
(1.1) 		63
(0) 		23.4
(-3) 		78
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 7.7
(-3)
A 		18.1
(1.1)
P 		23
(3)
A 		11.7
(-1.4)
A 		15
B 9.9
(-3)
A 		23.8
(3)
P 		19.9
(1.3)
A 		13.5
(-1.4)
P 		14
C 9.9
(-3)
A 		27
(3)
A 		24
(1.9)
P 		16.7
(-0.6)
P 		17
avr 9.2
(-3) 		23
(3) 		22.3
(2.7) 		14
(-0.9) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 15.7
(0.6)
P 		15.2
(0.5)
A 		22
(2.2)
P 		17.9
(1.2)
P 		25.3
(3)
A 		1.2
(-3)
A 		24
B 43.4
(3)
P 		23.8
(-0.8)
A 		13.3
(-2.8)
A 		22.3
(-1.1)
P 		20.1
(-1.5)
A 		12.5
(-3)
A 		31
C 35.2
(3)
P 		20.9
(-0.5)
P 		20.4
(-0.6)
M 		15.3
(-1.9)
A 		18
(-1.2)
A 		10.7
(-3)
A 		25
avr 31.4
(3) 		20
(0.1) 		18.6
(-0.3) 		18.5
(-0.3) 		21.1
(0.3) 		8.1
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183149_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11797
Sequence Type Exemplar sequence
Representative Public ID R03H4.6 NCBI
Target Description R03H4.6 /REP_DB=WormBase Gene ID /WP=CE07409 /TR=Q21689 /GB=AAC48105.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072934 NCBI Caenorhabditis elegans R03H4.6 (R03H4.6) mRNA, complete cds. 11/11 None
SNAP00000020054 ENSEMBL cdna:SNAP chromosome:CEL140:V:9025068:9027207:-1 11/11 None
R03H4.6 ENSEMBL cdna:known chromosome:CEL140:V:9024966:9027392:-1 gene:R03H4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9025068-9027378(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R03H4.6
Entrez Gene 187552 Entrez gene
SwissProt Q21689 EMBL-EBI
WormBase CE07409 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505335 R03H4.6 [Caenorhabditis elegans] gb|AAC48105.1| Hypothetical protein R03H4.6 [Caenorhabditis elegans] 0.0
blast CAE72076 Hypothetical protein CBG19162 [Caenorhabditis briggsae] 0.0
blast NP_505333 R03H4.1 [Caenorhabditis elegans] gb|AAC48109.1| Hypothetical protein R03H4.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.0E-126
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 6.2E-105
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505335.1 7 7-26,30-49,70-89,134-156,168-190,287-309,316-333
R03H4.6 7 7-26,30-49,70-89,134-156,168-190,287-309,316-333
SNAP00000020054 5 30-52,91-113,125-147,244-266,273-290
Sequence
Target Sequence 
>C. ELEGANS:183149_AT
gcagctatttatgcagactctcccggatcccatcaagcattagatatatttaagagaaat
gtagcaaagttcaaaccagacgtactattcatttctgctagatactcagaatcggttcga
cttcccataaaacacaacgatgcctatctcaaacagatgaatgaaaatattgaattttac
gagaaatttgtaaagaagatttacatattggattctcatccactttataacttgaatttt
ttaaacttttttatgcattatgttgtccaacgacccgatgagctggaatcgttacacttg
aatcgacaaaaagcagatgaacagatgagatatgtaaagaaacgattcagtatggtaaag
tgcaagaagtgccagttttacgatttgagccatgtatttgtggaaaacgataagtatctg
acttttgacagaggaagcatgctttcatacgtcgacaatacaattcaccttaccaaagtt
ggcgtcgaactttgtgaacctgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGCTATTTATGCAGACTCTCCCG 608 313 1411 Antisense
TCCCGGATCCCATCAAGCATTAGAT 579 597 1431 Antisense
GACGTACTATTCATTTCTGCTAGAT 123 377 1489 Antisense
CTCAGAATCGGTTCGACTTCCCATA 515 227 1515 Antisense
GGATTCTCATCCACTTTATAACTTG 670 507 1620 Antisense
TATGTTGTCCAACGACCCGATGAGC 5 657 1669 Antisense
GAGCTGGAATCGTTACACTTGAATC 485 387 1690 Antisense
GTGCCAGTTTTACGATTTGAGCCAT 257 477 1779 Antisense
GGAAGCATGCTTTCATACGTCGACA 473 531 1843 Antisense
GTCGACAATACAATTCACCTTACCA 269 475 1861 Antisense
TGGCGTCGAACTTTGTGAACCTGTG 205 545 1890 Antisense
Sequence Source Affymetrix Proprietary Database