[Home] | [Total List]

[183148_at]

Description F20D6.1 /REP_DB=WormBase Gene ID /WP=CE07106 /TR=Q19653 /GB=AAB37048.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 6.2
(-3)
A 		37.7
(-0.2)
A 		7.5
(-2.9)
A 		74
(3)
A 		68
B 22.2
(-0.8)
A 		5.9
(-3)
A 		18.6
(-1.3)
A 		50.6
(3)
A 		45
C 15.9
(-2)
A 		27
(-0.9)
A 		6.3
(-3)
A 		65
(3)
A 		59
avr 14.8
(-2.5) 		23.5
(-1.5) 		10.8
(-3) 		63.2
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 32.6
(-0.9)
A 		22.3
(-2.7)
A 		55.7
(3)
A 		20.5
(-3)
A 		33.3
(-0.8)
A 		44.4
(1.1)
A 		35
B 4.4
(-3)
A 		5.9
(-2.8)
A 		6.3
(-2.8)
A 		9.1
(-2.5)
A 		54.3
(2.8)
A 		55.8
(3)
A 		51
C 7.2
(-2.9)
A 		32.9
(0.7)
A 		6.8
(-3)
A 		8.8
(-2.7)
A 		32.2
(0.6)
A 		49.2
(3)
A 		42
avr 14.7
(-2.7) 		20.4
(-1.8) 		22.9
(-1.4) 		12.8
(-3) 		39.9
(1.4) 		49.8
(3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.2
(-2.9)
A 		8.2
(1.2)
A 		2
(-3)
A 		10.8
(3)
A 		9
B 7.1
(0.6)
A 		1.5
(-3)
A 		4.3
(-1.2)
A 		10.8
(3)
A 		9
C 5.3
(-0.9)
A 		7.8
(0.8)
A 		2.2
(-3)
A 		11
(3)
A 		9
avr 4.9
(-1.4) 		5.8
(-0.8) 		2.8
(-3) 		10.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6
(-2.3)
A 		7.9
(-0.7)
A 		12.1
(3)
A 		5.2
(-3)
A 		10.1
(1.3)
A 		10.8
(1.9)
A 		7
B 1.5
(-3)
A 		2
(-2.9)
A 		1.5
(-3)
A 		2.4
(-2.7)
A 		22.1
(3)
A 		20.8
(2.6)
A 		21
C 2.7
(-2.6)
A 		10
(0.4)
A 		1.7
(-3)
A 		1.8
(-3)
A 		10.4
(0.5)
A 		16.5
(3)
A 		15
avr 3.4
(-2.9) 		6.6
(-1.4) 		5.1
(-2.1) 		3.1
(-3) 		14.2
(2.2) 		16
(3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183148_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11516
Sequence Type Exemplar sequence
Representative Public ID F20D6.1 NCBI
Target Description F20D6.1 /REP_DB=WormBase Gene ID /WP=CE07106 /TR=Q19653 /GB=AAB37048.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072709(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072709 NCBI Caenorhabditis elegans F20D6.1 (F20D6.1) mRNA, complete cds. 11/11 None
SNAP00000033163 ENSEMBL cdna:SNAP chromosome:CEL140:V:8191607:8194593:1 11/11 None
GENEFINDER00000033167 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8193236:8194593:1 11/11 None
F20D6.1 ENSEMBL cdna:known chromosome:CEL140:V:8193236:8194593:1 gene:F20D6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8193236-8194594(+) 96.3 100.0
Public Domain and Genome References
Gene Title
Ensembl F20D6.1
Entrez Gene 184722 Entrez gene
SwissProt Q19653 EMBL-EBI
WormBase CE07106 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37048 Hypothetical protein F20D6.1 [Caenorhabditis elegans] ref|NP_505110.1| F20D6.1 [Caenorhabditis elegans] 1.0E-145
blast AAB37048 Hypothetical protein F20D6.1 [Caenorhabditis elegans] ref|NP_505110.1| F20D6.1 [Caenorhabditis elegans] 1.0E-134
blast AAB37048 Hypothetical protein F20D6.1 [Caenorhabditis elegans] ref|NP_505110.1| F20D6.1 [Caenorhabditis elegans] 1.0E-119
blast CAE57770 Hypothetical protein CBG00792 [Caenorhabditis briggsae] 3.0E-67
blast CAE74626 Hypothetical protein CBG22421 [Caenorhabditis briggsae] 3.0E-67
blast CAE74626 Hypothetical protein CBG22421 [Caenorhabditis briggsae] 4.0E-67
blast CAE57770 Hypothetical protein CBG00792 [Caenorhabditis briggsae] 1.0E-65
blast CAE57770 Hypothetical protein CBG00792 [Caenorhabditis briggsae] 2.0E-65
Sequence
Target Sequence 
>C. ELEGANS:183148_AT
acttgtgctcatttatttcccacgtagtaaacttggaatcaatgtgaagtcgtatcaaaa
tgtggattcggcaacgtttttttttttgaaactagacgcggaggaggtatatgtggaatc
aactgacaatacatggggctcgactactcgtcgtttcttgtatctcggagatgccatttt
gagaattgatgacactgaaattctagatcttccaacaactcaaaatgcccttcgtaccgg
gttctcgaaaaacggtgtggtaacaattattgtggagagagctgttcatcaagagtccta
cgctttcgttcgatctgttatgggcttcagtaaagttcttgatccaatgcttccacaaga
tgtcattcaaacttgcacagcacgtttggcgtatcacaacaaacatggattcgctgaacc
aacaccaattttcaagggatatacaaaagactacagctcagctgggcgggtttcagtgac
ca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTTGTGCTCATTTATTTCCCACGT 201 105 249 Antisense
TGACAATACATGGGGCTCGACTACT 683 571 372 Antisense
ACTCGTCGTTTCTTGTATCTCGGAG 276 99 394 Antisense
CAACAACTCAAAATGCCCTTCGTAC 692 189 461 Antisense
GAGCTGTTCATCAAGAGTCCTACGC 479 387 527 Antisense
TCCTACGCTTTCGTTCGATCTGTTA 215 591 544 Antisense
AAGTTCTTGATCCAATGCTTCCACA 203 157 581 Antisense
GATGTCATTCAAACTTGCACAGCAC 307 409 607 Antisense
TGCACAGCACGTTTGGCGTATCACA 296 577 622 Antisense
ATGGATTCGCTGAACCAACACCAAT 547 51 653 Antisense
TCAGCTGGGCGGGTTTCAGTGACCA 422 623 706 Antisense
Sequence Source Affymetrix Proprietary Database