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[183147_at]

Description C06G1.2 /REP_DB=WormBase Gene ID /WP=CE03965 /TR=Q17742 /GB=AAK32945.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 90      6grp_total > 0      4grp_total > 50      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 652
1 2 3 4 range
A 73.4
(-3)
A 		705.7
(3)
P 		552.3
(1.5)
P 		71.2
(-3)
A 		635
B 68.7
(-2.8)
A 		494.9
(3)
P 		493.2
(3)
P 		53.8
(-3)
A 		441
C 70.4
(-2.9)
A 		521.3
(3)
P 		485
(2.5)
P 		64.8
(-3)
A 		457
avr 70.8
(-2.9) 		574
(3) 		510.2
(2.3) 		63.3
(-3) 		511

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 197.6
(-2.3)
A 		531.5
(3)
P 		175.7
(-2.6)
P 		326.9
(-0.2)
P 		290.1
(-0.8)
P 		152.5
(-3)
P 		379
B 112.3
(-3)
A 		429.8
(3)
P 		228.3
(-0.8)
P 		232.3
(-0.7)
P 		361.2
(1.7)
P 		163
(-2)
P 		318
C 124.6
(-3)
P 		334
(2)
P 		237
(-0.3)
P 		244.2
(-0.1)
P 		373.7
(3)
P 		156.5
(-2.2)
P 		249
avr 144.8
(-3) 		431.8
(3) 		213.7
(-1.6) 		267.8
(-0.4) 		341.7
(1.1) 		157.3
(-2.7) 		287
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 26.7
(-2.3)
A 		153.2
(3)
P 		144.4
(2.6)
P 		10.4
(-3)
A 		143
B 21.9
(-2.4)
A 		122.2
(3)
P 		114.3
(2.6)
P 		11.5
(-3)
A 		111
C 23.3
(-2.5)
A 		149.9
(2.3)
P 		169
(3)
P 		10.9
(-3)
A 		158
avr 24
(-2.4) 		141.8
(3) 		142.6
(3) 		10.9
(-3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 36.4
(-3)
A 		189
(3)
P 		38.3
(-2.9)
P 		82.9
(-1.2)
P 		87.6
(-1)
P 		37.1
(-3)
P 		153
B 39.1
(-3)
A 		143.1
(2.8)
P 		55.4
(-2.1)
P 		61.5
(-1.8)
P 		146.8
(3)
P 		60.8
(-1.8)
P 		108
C 46.2
(-3)
P 		101.9
(1.5)
P 		60.3
(-1.9)
P 		49.1
(-2.8)
P 		120.9
(3)
P 		52.4
(-2.5)
P 		75
avr 40.6
(-3) 		144.7
(3) 		51.3
(-2.4) 		64.5
(-1.6) 		118.4
(1.5) 		50.1
(-2.5) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183147_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17856
Sequence Type Exemplar sequence
Representative Public ID C06G1.2 NCBI
Target Description C06G1.2 /REP_DB=WormBase Gene ID /WP=CE03965 /TR=Q17742 /GB=AAK32945.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078287 NCBI Caenorhabditis elegans C06G1.2 (C06G1.2) mRNA, complete cds. 11/11 None
SNAP00000018877 ENSEMBL cdna:SNAP chromosome:CEL140:X:16621810:16622414:1 11/11 None
GENEFINDER00000018886 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16621810:16622414:1 11/11 None
C06G1.2 ENSEMBL cdna:known chromosome:CEL140:X:16621810:16622414:1 gene:C06G1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16621809-16622414(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06G1.2
Entrez Gene 182337 Entrez gene
SwissProt Q17742 EMBL-EBI
WormBase CE03965 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK32945 Hypothetical protein C06G1.2 [Caenorhabditis elegans] ref|NP_510688.1| C06G1.2 [Caenorhabditis elegans] 1.0E-31
blast CAE69955 Hypothetical protein CBG16345 [Caenorhabditis briggsae] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:183147_AT
cgatgttctcggagcagtcgtcgaaggttctggtgtggaaattgaaaaagcttcaaccac
agaagctaccactaccactgtcgtagaaactacaactacagtagactctacaactactga
agtcgaaacgacaccaaccaccgaagctaccactactgtagctgaaaccactactgaagc
tgaaactaccacaactactgttgagtctaccactactacaactgaagcaaccacgacaga
agctgccaccactactaccacgactactgaagaaccagctaccactactaaagaaattac
taccaccgaaattgtgatcgctgagaccacaccaactgaagaggtcgatgaagaaagctt
ccttggattcaagaagccagatcttgctaccatctaccgtagactcttcccattccaaca
ccacccaggacaaaagcactacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATGTTCTCGGAGCAGTCGTCGAA 285 249 87 Antisense
AGTCGTCGAAGGTTCTGGTGTGGAA 386 59 102 Antisense
TTCAACCACAGAAGCTACCACTACC 204 685 138 Antisense
GCTACCACTACCACTGTCGTAGAAA 481 301 151 Antisense
ACCACCGAAGCTACCACTACTGTAG 21 87 223 Antisense
AAGCAACCACGACAGAAGCTGCCAC 366 151 311 Antisense
AGAACCAGCTACCACTACTAAAGAA 561 71 357 Antisense
TGTGATCGCTGAGACCACACCAACT 404 555 399 Antisense
AGAAGCCAGATCTTGCTACCATCTA 90 75 458 Antisense
TACCATCTACCGTAGACTCTTCCCA 79 651 474 Antisense
CACCACCCAGGACAAAAGCACTACC 592 199 505 Antisense
Sequence Source Affymetrix Proprietary Database