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[183145_at]

Description W06D12.7 /REP_DB=WormBase Gene ID /WP=CE25142 /TR=Q9U346 /GB=CAB63322.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 21      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 33.2
(-0.8)
A 		21.2
(-1.8)
A 		6.3
(-3)
A 		79.1
(3)
A 		73
B 28.6
(3)
A 		25.4
(2)
A 		9.1
(-3)
A 		24
(1.6)
A 		20
C 28.5
(3)
A 		18.6
(0.5)
A 		4.4
(-3)
A 		24.8
(2.1)
A 		24
avr 30.1
(0.9) 		21.7
(-0.5) 		6.6
(-3) 		42.6
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 5.7
(-2.8)
A 		4.2
(-3)
A 		57.4
(3)
A 		11.2
(-2.2)
A 		8.1
(-2.6)
A 		23.6
(-0.8)
A 		53
B 17.6
(-0.1)
A 		13.3
(-1.1)
A 		5.1
(-3)
A 		10.9
(-1.6)
A 		30.7
(3)
A 		8.4
(-2.2)
A 		26
C 4
(-3)
A 		14.3
(3)
A 		11.8
(1.5)
A 		7.2
(-1.1)
A 		5.3
(-2.2)
A 		4.7
(-2.6)
A 		10
avr 9.1
(-3) 		10.6
(-2.4) 		24.8
(3) 		9.8
(-2.7) 		14.7
(-0.9) 		12.2
(-1.8) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 12.1
(3)
A 		4.6
(-1.3)
A 		1.7
(-3)
A 		11.6
(2.7)
A 		10
B 9.1
(3)
A 		6.3
(0.6)
A 		2.1
(-3)
A 		5.1
(-0.4)
A 		7
C 9.4
(3)
A 		5.3
(-0.1)
A 		1.5
(-3)
A 		4.2
(-0.9)
A 		8
avr 10.2
(3) 		5.4
(-0.4) 		1.8
(-3) 		7
(0.7) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.1
(-3)
A 		1.5
(-2.8)
A 		12.5
(3)
A 		2.8
(-2.1)
A 		2.5
(-2.3)
A 		5.7
(-0.6)
A 		11
B 6.1
(-0.4)
A 		4.4
(-1.3)
A 		1.2
(-3)
A 		2.9
(-2.1)
A 		12.5
(3)
A 		3.1
(-2)
A 		11
C 1.5
(-3)
A 		4.4
(3)
A 		3
(0.1)
A 		1.5
(-3)
A 		1.7
(-2.6)
A 		1.6
(-2.8)
A 		3
avr 2.9
(-2.1) 		3.4
(-1.1) 		5.6
(3) 		2.4
(-3) 		5.6
(3) 		3.5
(-0.9) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183145_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13406
Sequence Type Exemplar sequence
Representative Public ID W06D12.7 NCBI
Target Description W06D12.7 /REP_DB=WormBase Gene ID /WP=CE25142 /TR=Q9U346 /GB=CAB63322.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075078(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075078 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-31) (srh-31) mRNA, complete cds. 11/11 None
SNAP00000010705 ENSEMBL cdna:SNAP chromosome:CEL140:V:17707700:17718591:1 11/11 None
W06D12.7 ENSEMBL cdna:known chromosome:CEL140:V:17709898:17712399:1 gene:W06D12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17709897-17712399(+) 99.9 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-31
Ensembl W06D12.7
Entrez Gene 189249 Entrez gene
SwissProt Q9U346 EMBL-EBI
WormBase CE25142 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63322 Hypothetical protein W06D12.7 [Caenorhabditis elegans] ref|NP_507479.1| Serpentine Receptor, class H family member (srh-31) [Caenorhabditis elegans] 0.0
blast CAB63322 Hypothetical protein W06D12.7 [Caenorhabditis elegans] ref|NP_507479.1| Serpentine Receptor, class H family member (srh-31) [Caenorhabditis elegans] 1.0E-138
blast CAB11545 Hypothetical protein Y26G10.2 [Caenorhabditis elegans] ref|NP_507477.1| Serpentine Receptor, class H family member (srh-32) [Caenorhabditis elegans] 1.0E-125
blast CAB11545 Hypothetical protein Y26G10.2 [Caenorhabditis elegans] ref|NP_507477.1| Serpentine Receptor, class H family member (srh-32) [Caenorhabditis elegans] 9.0E-94
blast CAB04927 Hypothetical protein W06D12.6 [Caenorhabditis elegans] ref|NP_507478.2| W06D12.6 [Caenorhabditis elegans] 1.0E-85
blast NP_503204 Serpentine Receptor, class H family member (srh-34) [Caenorhabditis elegans] gb|AAK84549.1| Serpentine receptor, class h protein 34 [Caenorhabditis elegans] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 3.2E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507479.1 7 15-37,49-71,99-121,134-156,201-223,244-266,276-298
W06D12.7 7 15-37,49-71,99-121,134-156,201-223,244-266,276-298
SNAP00000010705 5 442-464,477-499,544-566,587-609,619-641
Sequence
Target Sequence 
>C. ELEGANS:183145_AT
ggttggcttggacttttgtgttgatgttcccatttatgtcacttctcggtttcacaatac
gtgatcagccaaatgtgaaagctttgaccaaacagatctcttcatattaccccgactgca
ttgacaaccctaacgtaatagtacccatattgccggatgcggaaggtcagaaaaaatcac
tcgtattctttctaatgtatctatttacaatggcaaccgccagcatattgtctgcccagc
ttatttcacacttgctctcaaaacgaatgacaaatcagtcggacaaaaccaaaaagatgc
accaaaaattcaaccgtcgaagtctgtttcaagtgttaattgatatttccttcacctcat
ttccatatattatttcaaactttgcaacgctttttcagtggagagttcctgaacttacgt
actttgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGGCTTGGACTTTTGTGTTGAT 521 507 422 Antisense
GATGTTCCCATTTATGTCACTTCTC 60 411 444 Antisense
GTCACTTCTCGGTTTCACAATACGT 492 465 459 Antisense
CGACTGCATTGACAACCCTAACGTA 342 247 534 Antisense
AAATCACTCGTATTCTTTCTAATGT 241 117 595 Antisense
GGCAACCGCCAGCATATTGTCTGCC 239 535 633 Antisense
TATTGTCTGCCCAGCTTATTTCACA 11 667 647 Antisense
AATTCAACCGTCGAAGTCTGTTTCA 288 165 728 Antisense
GTTAATTGATATTTCCTTCACCTCA 559 445 756 Antisense
CCTTCACCTCATTTCCATATATTAT 544 269 770 Antisense
GTTCCTGAACTTACGTACTTTGTGG 583 441 826 Antisense
Sequence Source Affymetrix Proprietary Database