[Home] | [Total List]

[183144_at]

Description B0348.5 /REP_DB=WormBase Gene ID /WP=CE17330 /TR=O61954 /GB=AAC17808.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 49      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 32.1
(-3)
A 		272
(3)
P 		266.3
(2.9)
P 		67.1
(-2.1)
A 		240
B 65.5
(-2.9)
A 		268.9
(3)
P 		218.4
(1.5)
P 		61.7
(-3)
A 		207
C 36.7
(-3)
A 		231.7
(3)
P 		198
(2)
P 		79.3
(-1.7)
P 		195
avr 44.8
(-3) 		257.5
(3) 		227.6
(2.2) 		69.4
(-2.3) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 82.7
(-3)
A 		168.5
(3)
P 		113.2
(-0.9)
A 		136.1
(0.7)
P 		137.6
(0.8)
P 		120
(-0.4)
P 		86
B 84.8
(-3)
A 		133.2
(2.1)
P 		111.3
(-0.2)
A 		107
(-0.7)
P 		136.6
(2.4)
P 		142.3
(3)
P 		58
C 83.5
(-3)
A 		162.5
(1)
P 		85.4
(-2.9)
P 		202
(3)
P 		137.9
(-0.2)
P 		109.6
(-1.7)
P 		119
avr 83.7
(-3) 		154.7
(3) 		103.3
(-1.3) 		148.4
(2.5) 		137.4
(1.5) 		124
(0.4) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 11.7
(-2.8)
A 		59
(1.9)
P 		69.6
(3)
P 		9.8
(-3)
A 		60
B 20.9
(-2.1)
A 		66.4
(3)
P 		50.6
(1.2)
P 		13.2
(-3)
A 		53
C 12.2
(-3)
A 		66.6
(2.7)
P 		69
(3)
P 		13.4
(-2.9)
P 		57
avr 14.9
(-2.7) 		64
(3) 		63.1
(2.9) 		12.1
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 45
1 2 3 4 5 6 range
A 15.2
(-3)
A 		59.9
(3)
P 		24.7
(-1.7)
A 		34.5
(-0.4)
P 		41.5
(0.5)
P 		29.2
(-1.1)
P 		45
B 29.5
(-2.5)
A 		44.3
(0.6)
P 		27
(-3)
A 		28.4
(-2.7)
P 		55.5
(3)
P 		53.1
(2.5)
P 		29
C 31
(-1)
A 		49.6
(3)
P 		21.7
(-3)
P 		40.6
(1.1)
P 		44.6
(1.9)
P 		36.7
(0.2)
P 		28
avr 25.2
(-2.8) 		51.3
(3) 		24.5
(-3) 		34.5
(-0.8) 		47.2
(2.1) 		39.7
(0.4) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183144_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15366
Sequence Type Exemplar sequence
Representative Public ID B0348.5 NCBI
Target Description B0348.5 /REP_DB=WormBase Gene ID /WP=CE17330 /TR=O61954 /GB=AAC17808.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070721(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070721 NCBI Caenorhabditis elegans B0348.5 (B0348.5) mRNA, complete cds. 11/11 None
SNAP00000028737 ENSEMBL cdna:SNAP chromosome:CEL140:V:5366:6339:1 11/11 None
GENEFINDER00000028747 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5485:6339:1 11/11 None
B0348.5 ENSEMBL cdna:known chromosome:CEL140:V:5518:6339:1 gene:B0348.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5517-6339(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0348.5
Entrez Gene 181937 Entrez gene
SwissProt O61954 EMBL-EBI
WormBase CE17330 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17808 Hypothetical protein B0348.5 [Caenorhabditis elegans] ref|NP_503122.1| B0348.5 [Caenorhabditis elegans] 1.0E-118
blast CAE62307 Hypothetical protein CBG06369 [Caenorhabditis briggsae] 5.0E-99
blast CAE62307 Hypothetical protein CBG06369 [Caenorhabditis briggsae] 1.0E-83
blast CAE62307 Hypothetical protein CBG06369 [Caenorhabditis briggsae] 4.0E-80
Sequence
Target Sequence 
>C. ELEGANS:183144_AT
gctccattttccggactggtcggaggaagtcgatctgggtactacgggagcactgttggt
atgagacggggtgccgttgtgccgcctatgagctccaggaagacgaaaattccacagact
gagtatccacctgattacgcatctaacgacctgatgaacagtttcaatggagctacaaat
tccgcgatcccatcacttcgcgagcttgccacctatgcgtcacgctatggtcccgcatat
cttcgcgaacgattcggaagccatgattcccaacttgagcgtatgctttatggcggcagt
ggaccacagatcccatcacgtggaggaggaattcccatagattacaacatgaacattgct
tcgaatcactggaaccgaggaattggctctccgatgggaattatgtcgcgggatgttgat
tcctatcaacacgacgatgcggccaaagcaaacaaaaagaccactaccggctcgccgagc
acgacgagcacacggaaacctcggaaagctaggaagccaaccaagaagactgttgccgca
gctccttcgtctagctcgaacacatcgactacggcaaagcctgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCATTTTCCGGACTGGTCGGAG 576 297 160 Antisense
GTCGATCTGGGTACTACGGGAGCAC 92 471 188 Antisense
GTATCCACCTGATTACGCATCTAAC 534 453 282 Antisense
TGGAGCTACAAATTCCGCGATCCCA 417 549 327 Antisense
GCCACCTATGCGTCACGCTATGGTC 249 279 367 Antisense
TCCCGCATATCTTCGCGAACGATTC 317 597 390 Antisense
AAGCCATGATTCCCAACTTGAGCGT 169 149 417 Antisense
TGGACCACAGATCCCATCACGTGGA 42 549 459 Antisense
GGAACCGAGGAATTGGCTCTCCGAT 488 529 530 Antisense
TCCTTCGTCTAGCTCGAACACATCG 198 591 702 Antisense
ACACATCGACTACGGCAAAGCCTGC 400 109 719 Antisense
Sequence Source Affymetrix Proprietary Database