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[183143_at] 7TM chemoreceptor, srg family

Description ZC317.4 /REP_DB=WormBase Gene ID /WP=CE15173 /TR=Q23076 /GB=AAB04961.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 19      6grp_cgc > 86      6grp_cgc_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 4
(-2.6)
A 		2.7
(-3)
A 		3.9
(-2.7)
A 		24.3
(3)
A 		22
B 4
(-2.7)
A 		30.5
(3)
A 		2.6
(-3)
A 		23.3
(1.5)
A 		28
C 3.5
(-2.6)
A 		14.3
(-1)
A 		1.1
(-3)
A 		39.9
(3)
A 		39
avr 3.8
(-2.7) 		15.8
(-0) 		2.5
(-3) 		29.2
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.2
(-0.2)
A 		3.9
(-0.5)
A 		2.1
(-2.3)
A 		3.1
(-1.3)
A 		7.3
(3)
A 		1.4
(-3)
A 		6
B 6.5
(-1.9)
A 		3.4
(-2.7)
A 		4.7
(-2.3)
A 		22.1
(2.2)
A 		25.4
(3)
A 		2.1
(-3)
A 		23
C 3.7
(-2.2)
A 		6.4
(-1.2)
A 		3.4
(-2.3)
A 		17.1
(3)
A 		1.7
(-3)
A 		3.2
(-2.4)
A 		15
avr 4.8
(-1.7) 		4.6
(-1.8) 		3.4
(-2.4) 		14.1
(3) 		11.5
(1.7) 		2.2
(-3) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-1.4)
A 		0.6
(-3)
A 		1
(-2.2)
A 		3.6
(3)
A 		3
B 1.3
(-2.4)
A 		7.5
(3)
A 		0.6
(-3)
A 		5
(0.8)
A 		7
C 1.2
(-2.2)
A 		4.1
(0.5)
A 		0.4
(-3)
A 		6.7
(3)
A 		6
avr 1.3
(-2.2) 		4.1
(1.6) 		0.7
(-3) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-1.4)
A 		1.4
(0.5)
A 		0.5
(-2.4)
A 		0.8
(-1.4)
A 		2.2
(3)
A 		0.3
(-3)
A 		2
B 2.3
(-2.1)
A 		1.1
(-2.8)
A 		1.1
(-2.8)
A 		5.8
(0.2)
A 		10.3
(3)
A 		0.8
(-3)
A 		10
C 1.4
(-1.1)
A 		2
(0.1)
A 		0.9
(-2.2)
A 		3.4
(3)
A 		0.5
(-3)
A 		1.1
(-1.8)
A 		3
avr 1.5
(-1.7) 		1.5
(-1.7) 		0.8
(-2.8) 		3.3
(1.3) 		4.3
(3) 		0.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183143_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11769
Sequence Type Exemplar sequence
Representative Public ID ZC317.4 NCBI
Target Description ZC317.4 /REP_DB=WormBase Gene ID /WP=CE15173 /TR=Q23076 /GB=AAB04961.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072042 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-67) (srg-67) mRNA, complete cds. 11/11 None
SNAP00000026641 ENSEMBL cdna:SNAP chromosome:CEL140:V:5461340:5462929:-1 11/11 None
GENEFINDER00000026648 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5461340:5465247:-1 11/11 None
ZC317.4 ENSEMBL cdna:known chromosome:CEL140:V:5461340:5462806:-1 gene:ZC317.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5461339-5462929(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-67
Ensembl ZC317.4
Entrez Gene 191140 Entrez gene
SwissProt Q23076 EMBL-EBI
WormBase CE33257 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04961 Serpentine receptor, class g (gamma) protein 67 [Caenorhabditis elegans] ref|NP_504443.2| Serpentine Receptor, class G (gamma) family member (srg-67) [Caenorhabditis elegans] 1.0E-172
blast AAB04961 Serpentine receptor, class g (gamma) protein 67 [Caenorhabditis elegans] ref|NP_504443.2| Serpentine Receptor, class G (gamma) family member (srg-67) [Caenorhabditis elegans] 1.0E-171
blast AAB04962 Serpentine receptor, class g (gamma) protein 68 [Caenorhabditis elegans] ref|NP_504444.1| Serpentine Receptor, class G (gamma) family member (srg-68) [Caenorhabditis elegans] 1.0E-167
blast AAB04961 Serpentine receptor, class g (gamma) protein 67 [Caenorhabditis elegans] ref|NP_504443.2| Serpentine Receptor, class G (gamma) family member (srg-67) [Caenorhabditis elegans] 1.0E-145
blast NP_504449 Serpentine Receptor, class G (gamma) family member (srg-66) [Caenorhabditis elegans] gb|AAO26001.1| Serpentine receptor, class g (gamma) protein 66 [Caenorhabditis elegans] 1.0E-136
blast NP_504449 Serpentine Receptor, class G (gamma) family member (srg-66) [Caenorhabditis elegans] gb|AAO26001.1| Serpentine receptor, class g (gamma) protein 66 [Caenorhabditis elegans] 8.0E-95
blast AAB04962 Serpentine receptor, class g (gamma) protein 68 [Caenorhabditis elegans] ref|NP_504444.1| Serpentine Receptor, class G (gamma) family member (srg-68) [Caenorhabditis elegans] 7.0E-94
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504443.2 6 21-43,103-125,137-159,190-212,232-254,269-288
ZC317.4 6 21-43,103-125,137-159,190-212,232-254,269-288
SNAP00000026641 5 92-114,126-148,179-201,221-243,258-277
GENEFINDER00000026648 12 21-43,53-75,157-179,206-228,249-271,286-305,353-375,435-457,469-491,522-544,564-586,601-620
Sequence
Target Sequence 
>C. ELEGANS:183143_AT
attcaatttctatcagcatgctcgttgagtgctcatcgaatatcatcgttttggtggcca
acgatttatgaaatgttctggtctcaatattatgtggcatgcggtcttgcatttgtaatc
tacagtttcatgccaactctcatctggcacgagttcgcagtagaggtatcaattgaaaac
ggaattctcatgaaaactttacgtcctacaacaataatgtttgcgttgaatgttacggct
ggattctctacagcatattttattattatttcagttttgggaattacaacagcctacatt
gtatataaaatggagaaatcgctctccgctatttatagcaaagttgccaagaaattgacc
aagatcgcatttacctatagtgctgtatatcttggaattctgttttggactgttgccact
gctttgaatttttatattggtgtaattccagacttgatcatggagataaataacacaatt
atggtgttttgctcgggtttgatgacactttctctcccatacgttttattattctttgat
acaaatgtaaaaaagcagttctttccgaaatcagctactaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCAATTTCTATCAGCATGCTCGT 80 13 466 Antisense
GCATGCTCGTTGAGTGCTCATCGAA 610 309 481 Antisense
TACAGTTTCATGCCAACTCTCATCT 445 641 586 Antisense
CTCTCATCTGGCACGAGTTCGCAGT 453 231 602 Antisense
AATCGCTCTCCGCTATTTATAGCAA 292 169 782 Antisense
GACCAAGATCGCATTTACCTATAGT 306 383 822 Antisense
TGGAATTCTGTTTTGGACTGTTGCC 167 547 858 Antisense
GACTGTTGCCACTGCTTTGAATTTT 607 375 873 Antisense
ATTATGGTGTTTTGCTCGGGTTTGA 388 13 943 Antisense
TTTCTCTCCCATACGTTTTATTATT 514 671 974 Antisense
GTTCTTTCCGAAATCAGCTACTACA 685 443 1023 Antisense
Sequence Source Affymetrix Proprietary Database