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[183141_at]

Description W03A5.2 /REP_DB=WormBase Gene ID /WP=CE25135 /TR=Q23135 /GB=AAA50731.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 1.1
(-3)
A 		3
(-1.5)
A 		2.2
(-2.1)
A 		8.7
(3)
A 		8
B 1.3
(-3)
A 		2
(-2.3)
A 		1.5
(-2.8)
A 		7
(3)
A 		6
C 3.2
(-2.8)
A 		2.2
(-3)
A 		6
(-2.2)
A 		30.7
(3)
A 		29
avr 1.9
(-3) 		2.4
(-2.8) 		3.2
(-2.4) 		15.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 5.5
(-2.2)
A 		1.7
(-3)
A 		2.3
(-2.9)
A 		5.5
(-2.2)
A 		5
(-2.3)
A 		30.4
(3)
A 		29
B 2.4
(-3)
A 		7.8
(3)
A 		2.5
(-2.9)
A 		4.6
(-0.6)
A 		4.1
(-1.1)
A 		5.3
(0.2)
A 		5
C 2
(-3)
A 		3.7
(-2.7)
A 		2.4
(-2.9)
A 		2.6
(-2.9)
A 		3.1
(-2.8)
A 		40.8
(3)
A 		39
avr 3.3
(-2.8) 		4.4
(-2.5) 		2.4
(-3) 		4.2
(-2.5) 		4.1
(-2.6) 		25.5
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.4
(-3)
A 		0.7
(-1)
A 		0.6
(-1.7)
A 		1.3
(3)
A 		1
B 0.4
(-2.5)
A 		0.5
(-2)
A 		0.3
(-3)
A 		1.5
(3)
A 		1
C 1.1
(-2.3)
A 		0.6
(-3)
A 		2.1
(-1)
A 		5.2
(3)
A 		5
avr 0.6
(-3) 		0.6
(-3) 		1
(-1.9) 		2.7
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1
(-2.6)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		1.4
(-2.2)
A 		1.5
(-2.1)
A 		7.4
(3)
A 		7
B 0.8
(-2.4)
A 		2.6
(3)
A 		0.6
(-3)
A 		1.2
(-1.2)
A 		1.7
(0.3)
A 		2
(1.2)
A 		2
C 0.7
(-2.9)
A 		1.1
(-2.7)
A 		0.6
(-3)
A 		0.5
(-3)
A 		1
(-2.8)
A 		13.7
(3)
A 		13
avr 0.8
(-2.8) 		1.4
(-2.3) 		0.6
(-3) 		1
(-2.7) 		1.4
(-2.3) 		7.7
(3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183141_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6242
Sequence Type Exemplar sequence
Representative Public ID W03A5.2 NCBI
Target Description W03A5.2 /REP_DB=WormBase Gene ID /WP=CE25135 /TR=Q23135 /GB=AAA50731.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065752(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065752 NCBI Caenorhabditis elegans W03A5.1 (W03A5.1) mRNA, complete cds. 11/11 None
GENEFINDER00000014249 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5406092:5413010:1 11/11 None
SNAP00000014239 ENSEMBL cdna:SNAP chromosome:CEL140:III:5408703:5413010:1 11/11 None
W03A5.1 ENSEMBL cdna:known chromosome:CEL140:III:5408066:5413133:1 gene:W03A5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5406526-5413009(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W03A5.1
Entrez Gene 175744 Entrez gene
SwissProt Q23136 EMBL-EBI
WormBase CE33194 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAL02528 Hypothetical protein W03A5.1 [Caenorhabditis elegans] ref|NP_498153.2| W03A5.1 [Caenorhabditis elegans] 0.0
blast CAE61334 Hypothetical protein CBG05172 [Caenorhabditis briggsae] 0.0
blast C88456 protein W03A5.2 [imported] - Caenorhabditis elegans 0.0
blast C88456 protein W03A5.2 [imported] - Caenorhabditis elegans 1.0E-180
Protein Families
Method ID Description E-Value
ec 3HAO_HUMAN (P46952) 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6) (3-HAO) (3-hydroxyanthranilic acid dioxygenase) (3-hydroxyanthranilate oxygenase) 5.8
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-49
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-49
Pfam IPR000719 EMBL-EBI Protein kinase 1.7E-49
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000014249 7 2-24,34-53,74-93,103-125,137-159,169-191,465-482
Sequence
Target Sequence 
>C. ELEGANS:183141_AT
ggatattcttgcacaaatctgtcgtggaatgagctttttgcatacgagaaccccttcgat
tgttcatggagatcttgcggcaagaaatgttcttcttaaaaagcatcccgtgtacatcaa
gaaatacatctgcaaaataaccgacttgggattagccaagacgtgtcttgacgagctcta
cacaagctatgatgatccaacgaaaatcccattcaaatggctacccccagaagttcttgg
aagccgtactttgtcactgaaaactgacatttgggcatttgggattgtgtgctttgaagt
ttgtgacaaggttggagagccctatggagcatgtgtgccgacttctaatctgtgtcagta
cttgactgatggatatgttcatgaaaagggccttcatatgtctgacaccatttacaatat
tgcactggactgtatgaggcagcatccaattgagcgaccctcatttgcagagcttgtgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATATTCTTGCACAAATCTGTCGT 68 511 2586 Antisense
TGAGCTTTTTGCATACGAGAACCCC 213 567 2615 Antisense
GAGAACCCCTTCGATTGTTCATGGA 622 391 2631 Antisense
AAAAGCATCCCGTGTACATCAAGAA 338 131 2684 Antisense
AAGACGTGTCTTGACGAGCTCTACA 427 153 2743 Antisense
TCAAATGGCTACCCCCAGAAGTTCT 655 627 2798 Antisense
GAAGTTCTTGGAAGCCGTACTTTGT 6 335 2815 Antisense
GAGAGCCCTATGGAGCATGTGTGCC 156 395 2900 Antisense
GTGCCGACTTCTAATCTGTGTCAGT 302 479 2920 Antisense
AGGCAGCATCCAATTGAGCGACCCT 145 55 3022 Antisense
CGACCCTCATTTGCAGAGCTTGTGG 80 251 3040 Antisense
Sequence Source Affymetrix Proprietary Database