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[183139_at]

Description F15A4.11 /REP_DB=WormBase Gene ID /WP=CE23655 /TR=Q9U3J3 /GB=CAB54221.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 91      6grp_total > 93      4grp_total > 56      6grp_high1_sub > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 229
1 2 3 4 range
A 334
(0.3)
P 		228.6
(-3)
P 		421
(3)
P 		247.2
(-2.4)
A 		192
B 319.1
(-0.3)
P 		264
(-1.8)
P 		445.9
(3)
P 		216.6
(-3)
A 		229
C 326.2
(-3)
P 		382.2
(3)
P 		333.2
(-2.3)
P 		337.1
(-1.8)
A 		56
avr 326.4
(-0.3) 		291.6
(-1.9) 		400
(3) 		267
(-3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 284.2
(2.4)
A 		187.9
(-1.7)
P 		245.8
(0.8)
P 		156.9
(-3)
P 		299
(3)
M 		291.5
(2.7)
P 		142
B 265.2
(-1.2)
P 		286.9
(-0.1)
P 		247.8
(-2.1)
P 		287.2
(-0.1)
P 		346.1
(3)
P 		231.5
(-3)
P 		115
C 245.5
(-1.4)
P 		258.1
(-0.7)
P 		316.5
(3)
P 		225
(-2.7)
P 		234.7
(-2.1)
P 		220.6
(-3)
P 		96
avr 265
(0.6) 		244.3
(-1.2) 		270
(1) 		223
(-3) 		293.3
(3) 		247.9
(-0.9) 		70
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 121.6
(3)
P 		49.6
(-2.1)
P 		110.1
(2.2)
P 		36.2
(-3)
A 		85
B 101.8
(2.8)
P 		65.2
(-1)
P 		103.3
(3)
P 		46.2
(-3)
A 		57
C 108
(2.2)
P 		109.9
(2.4)
P 		116.1
(3)
P 		56.8
(-3)
A 		59
avr 110.5
(3) 		74.9
(-0.3) 		109.8
(2.9) 		46.4
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 52.4
(-1.5)
A 		66.8
(0.2)
P 		53.5
(-1.4)
P 		39.8
(-3)
P 		90.2
(3)
M 		71
(0.7)
P 		50
B 92.3
(-0.6)
P 		95.5
(-0.4)
P 		60.2
(-3)
P 		76.1
(-1.8)
P 		140.6
(3)
P 		86.3
(-1.1)
P 		80
C 91
(3)
P 		78.8
(1.4)
P 		80.6
(1.6)
P 		45.2
(-3)
P 		75.9
(1)
P 		73.8
(0.7)
P 		46
avr 78.6
(0.1) 		80.4
(0.3) 		64.8
(-1.6) 		53.7
(-3) 		102.2
(3) 		77
(-0.1) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183139_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2988
Sequence Type Exemplar sequence
Representative Public ID F15A4.11 NCBI
Target Description F15A4.11 /REP_DB=WormBase Gene ID /WP=CE23655 /TR=Q9U3J3 /GB=CAB54221.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064251 NCBI Caenorhabditis elegans F15A4.11 (F15A4.11) mRNA, complete cds. 11/11 None
GENEFINDER00000042561 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12459687:12460359:1 11/11 None
F15A4.11 ENSEMBL cdna:known chromosome:CEL140:II:12459675:12460332:1 gene:F15A4.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12459683-12460329(+) 97.95 100.0
Public Domain and Genome References
Gene Title
Ensembl F15A4.11
Entrez Gene 174884 Entrez gene
SwissProt Q9U3J3 EMBL-EBI
WormBase CE23655 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54221 Hypothetical protein F15A4.11 [Caenorhabditis elegans] ref|NP_496652.1| F15A4.11 [Caenorhabditis elegans] 1.0E-62
blast CAE73497 Hypothetical protein CBG20954 [Caenorhabditis briggsae] 4.0E-52
blast CAE57162 Hypothetical protein CBG25096 [Caenorhabditis briggsae] 1.0E-26
Sequence
Target Sequence 
>C. ELEGANS:183139_AT
atgggtggagttttctcatcggccagctcaaaccaagcacaaatcaccggaattcttcaa
gaactcgagagaacgcggctcgaacgagaaattgcactggctcatctccaagaacgccgc
agaatcgcgttcaaaatcgccgaagagcgtgaaaaattcaattggatcgcgtgtggaggc
agtttggttgtagttctctcggcattatcttcttttcatcataaaaatctgctccacgtc
attccaatcttcccaatggcgtcattcatcggctacaaagctcatttttgttatggagat
cagctaaaaaagatttccgaaacctctactcaactgcttgaagaatccgtggacgccctg
gtgccgctgccgccgacgattgccgatgttcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGTGGAGTTTTCTCATCGGCCA 365 51 13 Antisense
AGAAATTGCACTGGCTCATCTCCAA 304 71 99 Antisense
TCATCTCCAAGAACGCCGCAGAATC 142 621 114 Antisense
GATCGCGTGTGGAGGCAGTTTGGTT 572 413 177 Antisense
TTGTAGTTCTCTCGGCATTATCTTC 504 705 200 Antisense
CATAAAAATCTGCTCCACGTCATTC 633 213 232 Antisense
TCCAATCTTCCCAATGGCGTCATTC 264 587 255 Antisense
GCGTCATTCATCGGCTACAAAGCTC 691 289 271 Antisense
AGATTTCCGAAACCTCTACTCAACT 278 65 323 Antisense
ACTGCTTGAAGAATCCGTGGACGCC 7 99 345 Antisense
CCGCCGACGATTGCCGATGTTCGGA 631 261 382 Antisense
Sequence Source Affymetrix Proprietary Database