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[183138_at]

Description C06A6.5 /REP_DB=WormBase Gene ID /WP=CE27661 /TR=Q17688 /GB=AAA82296.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 08      4grp_high_8_8 > 53      6grp_highest_nonorm > 44      6grp_total > 71      4grp_total > 58      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1039
1 2 3 4 range
A 1154.8
(0.4)
P 		1611.4
(3)
P 		1349.7
(1.5)
P 		572
(-3)
P 		1039
B 963.1
(-1)
P 		1578.2
(3)
P 		1428.4
(2)
P 		650.5
(-3)
P 		928
C 1128.6
(0)
P 		1590
(3)
P 		1445.5
(2.1)
P 		659.6
(-3)
P 		930
avr 1082.2
(-0.2) 		1593.2
(3) 		1407.9
(1.8) 		627.4
(-3) 		966

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2693
1 2 3 4 5 6 range
A 1597.5
(-1.6)
P 		1906.5
(-0.9)
P 		1813.6
(-1.1)
P 		3569.8
(3)
P 		1958.4
(-0.7)
P 		988.5
(-3)
P 		2581
B 1362.1
(-1.2)
P 		1550.1
(-0.5)
P 		2022.6
(1.2)
P 		2518.7
(3)
P 		1950.5
(0.9)
P 		877.1
(-3)
P 		1642
C 1921.7
(-0.6)
P 		1456
(-2)
P 		2034.8
(-0.3)
P 		3132.8
(3)
P 		2174.7
(0.2)
P 		1110.5
(-3)
P 		2022
avr 1627.1
(-1.2) 		1637.5
(-1.1) 		1957
(-0.2) 		3073.8
(3) 		2027.9
(-0) 		992
(-3) 		2082
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 420
1 2 3 4 range
A 420.5
(3)
P 		349.8
(1.7)
P 		352.8
(1.8)
P 		83.7
(-3)
P 		337
B 307.1
(1)
P 		389.8
(3)
P 		331
(1.6)
P 		138.6
(-3)
P 		251
C 373.6
(1)
P 		457.1
(2.3)
P 		503.8
(3)
P 		111.2
(-3)
P 		393
avr 367.1
(2.3) 		398.9
(3) 		395.9
(2.9) 		111.2
(-3) 		288

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 665
1 2 3 4 5 6 range
A 294.5
(-2.5)
P 		678.1
(0.9)
P 		395
(-1.6)
P 		905.4
(3)
P 		591
(0.2)
P 		240.7
(-3)
P 		665
B 473.9
(-1.1)
P 		515.9
(-0.6)
P 		491.1
(-0.9)
P 		667.1
(1.4)
P 		792.5
(3)
P 		327.1
(-3)
P 		465
C 712.3
(3)
P 		444.3
(-1.7)
P 		517.9
(-0.4)
P 		630
(1.6)
P 		703.7
(2.8)
P 		371.7
(-3)
P 		341
avr 493.6
(-0.4) 		546.1
(0.3) 		468
(-0.8) 		734.2
(3) 		695.7
(2.5) 		313.2
(-3) 		421
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183138_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8446
Sequence Type Exemplar sequence
Representative Public ID C06A6.5 NCBI
Target Description C06A6.5 /REP_DB=WormBase Gene ID /WP=CE27661 /TR=Q17688 /GB=AAA82296.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068902 NCBI Caenorhabditis elegans C06A6.5 (C06A6.5) mRNA, complete cds. 11/11 None
SNAP00000040235 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7832475:7834655:-1 11/11 None
GENEFINDER00000040243 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7832325:7834655:-1 11/11 None
C06A6.5 ENSEMBL cdna:known chromosome:CEL140:IV:7832326:7834658:-1 gene:C06A6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7832480-7834334(-) 99.74 100.0
Public Domain and Genome References
Gene Title
Ensembl C06A6.5
Entrez Gene 177572 Entrez gene
SwissProt Q17688 EMBL-EBI
WormBase CE27661 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA82296 Hypothetical protein C06A6.5 [Caenorhabditis elegans] ref|NP_501303.1| C06A6.5 [Caenorhabditis elegans] 0.0
blast CAE70898 Hypothetical protein CBG17689 [Caenorhabditis briggsae] 0.0
blast AAB63409 Hypothetical protein C30H7.2 [Caenorhabditis elegans] ref|NP_491589.1| C30H7.2 [Caenorhabditis elegans] 9.0E-92
Protein Domains
Database ID Description E-Value
Pfam IPR006662 EMBL-EBI Thioredoxin type domain 4.0E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000040243 2 412-429,436-458
Sequence
Target Sequence 
>C. ELEGANS:183138_AT
gaatgccattcctcatttatttccgtgatcctgataacaaaacaactgataaagtatttg
gagaagctgttgctcgtgaactttatgatcaaagatctgcaattaatccacttcttgccg
atggacataaatttgctcatccattgaaacatctcggaaaaacaaaggaagatcttccag
ttcttgcgattgattcattccagcatatgtatctattccctgatatgacacaaatgaata
ttccaggtaaacttagagagtttgttatggatcttcactctggaaagcttcacaaggact
tccacgagaaccttgatcaacgaatgatcgagctcgccaaggcaaaagctgcacgtggaa
tcactgatgatcatgaagctcaagctccatctactcgtccaattgacacaacaccacctc
catcagtgttcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCCATTCCTCATTTATTTCCG 199 331 695 Antisense
GAAGCTGTTGCTCGTGAACTTTATG 420 343 757 Antisense
TAATCCACTTCTTGCCGATGGACAT 65 635 798 Antisense
AGATCTTCCAGTTCTTGCGATTGAT 254 67 864 Antisense
ATTCCAGCATATGTATCTATTCCCT 509 7 891 Antisense
GGATCTTCACTCTGGAAAGCTTCAC 542 511 963 Antisense
GAAAGCTTCACAAGGACTTCCACGA 16 361 977 Antisense
GAATGATCGAGCTCGCCAAGGCAAA 253 331 1016 Antisense
ATGAAGCTCAAGCTCCATCTACTCG 233 45 1067 Antisense
TCGTCCAATTGACACAACACCACCT 679 603 1089 Antisense
AACACCACCTCCATCAGTGTTCAAA 442 135 1104 Antisense
Sequence Source Affymetrix Proprietary Database