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[183137_at]

Description F25E5.9 /REP_DB=WormBase Gene ID /WP=CE07143 /TR=O76648 /GB=AAG24079.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 30      4grp_total > 10      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 10.5
(-3)
A 		14
(-2.7)
A 		11
(-3)
A 		71.7
(3)
A 		61
B 6.7
(-3)
A 		17.3
(3)
A 		15.6
(2)
A 		16.3
(2.4)
A 		11
C 23.1
(-2.4)
A 		17.3
(-2.7)
A 		11
(-3)
A 		129.4
(3)
A 		118
avr 13.4
(-2.9) 		16.2
(-2.6) 		12.5
(-3) 		72.5
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 6.9
(0.1)
A 		3.6
(-3)
A 		9.9
(3)
A 		6.9
(0.1)
A 		4.1
(-2.5)
A 		4.4
(-2.2)
A 		6
B 12.8
(-1.3)
A 		7.4
(-2.5)
A 		31.2
(3)
A 		8
(-2.4)
A 		5.4
(-3)
A 		9.8
(-2)
A 		26
C 5
(-3)
A 		36.4
(1.8)
A 		8.8
(-2.4)
A 		44.4
(3)
A 		6.2
(-2.8)
A 		4.9
(-3)
A 		40
avr 8.2
(-1.8) 		15.8
(1.4) 		16.6
(1.7) 		19.8
(3) 		5.2
(-3) 		6.4
(-2.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 3.8
(-2.3)
A 		3
(-2.9)
A 		2.9
(-3)
A 		10.5
(3)
A 		8
B 2.1
(-3)
A 		4.3
(3)
A 		3.6
(1.1)
A 		3.5
(0.8)
A 		2
C 7.7
(-1.7)
A 		5
(-2.6)
A 		3.9
(-3)
A 		21.8
(3)
A 		18
avr 4.5
(-2.3) 		4.1
(-2.6) 		3.5
(-3) 		11.9
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.3
(-1.9)
A 		1.3
(-1.9)
A 		2.2
(3)
A 		1.7
(0.3)
A 		1.2
(-2.5)
A 		1.1
(-3)
A 		1
B 4.5
(-0.4)
A 		2.4
(-2.7)
A 		7.6
(3)
A 		2.1
(-3)
A 		2.2
(-2.9)
A 		3.7
(-1.3)
A 		6
C 1.8
(-2.9)
A 		11.1
(3)
A 		2.2
(-2.6)
A 		8.9
(1.6)
A 		2
(-2.7)
A 		1.6
(-3)
A 		10
avr 2.5
(-1.6) 		4.9
(3) 		4
(1.3) 		4.2
(1.6) 		1.8
(-3) 		2.1
(-2.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183137_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12505
Sequence Type Exemplar sequence
Representative Public ID F25E5.9 NCBI
Target Description F25E5.9 /REP_DB=WormBase Gene ID /WP=CE07143 /TR=O76648 /GB=AAG24079.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072509 NCBI Caenorhabditis elegans F25E5.9 (F25E5.9) mRNA, complete cds. 11/11 None
F25E5.9 ENSEMBL cdna:known chromosome:CEL140:V:7440098:7440511:-1 gene:F25E5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7440098-7440512(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F25E5.9
Entrez Gene 184928 Entrez gene
SwissProt O76648 EMBL-EBI
WormBase CE07143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24079 Hypothetical protein F25E5.9 [Caenorhabditis elegans] ref|NP_504910.1| F25E5.9 [Caenorhabditis elegans] 3.0E-59
Sequence
Target Sequence 
>C. ELEGANS:183137_AT
ccctgctgacggtgtgcatgtgcgtgagagtgtgcatagaaacggcgccattgatttgaa
tgaatgtccgctctctttctgtgtctactttcttcgtcttccgtcttcttcgttttgtcg
agacttatgtgctatatgcggaggagccaagccaacgtctctctcaattgaggagtgcat
gtgtgctccacattcattttttttggtttcagtggttctgttgaagagaagaacaagaag
aagaagaacggagaagagtacaattacggaaatgcagcccggcgaggattgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCTGCTGACGGTGTGCATGTGCGT 525 257 48 Antisense
GAGTGTGCATAGAAACGGCGCCATT 522 401 75 Antisense
TTGAATGAATGTCCGCTCTCTTTCT 590 703 103 Antisense
TCCGTCTTCTTCGTTTTGTCGAGAC 422 595 147 Antisense
GTCGAGACTTATGTGCTATATGCGG 556 473 164 Antisense
ATATGCGGAGGAGCCAAGCCAACGT 83 21 181 Antisense
AGCCAACGTCTCTCTCAATTGAGGA 90 85 197 Antisense
AGGAGTGCATGTGTGCTCCACATTC 687 55 218 Antisense
TTTTTGGTTTCAGTGGTTCTGTTGA 705 673 247 Antisense
GAGTACAATTACGGAAATGCAGCCC 348 397 303 Antisense
AAATGCAGCCCGGCGAGGATTGCCA 399 119 317 Antisense
Sequence Source Affymetrix Proprietary Database