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[183135_at] 7TM chemoreceptor, srb family

Description C54F6.7 /REP_DB=WormBase Gene ID /WP=CE08979 /TR=O16444 /GB=AAG24011.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 30      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 110
1 2 3 4 range
A 30.8
(3)
A 		9
(-2.7)
A 		8
(-3)
A 		11.3
(-2.1)
A 		23
B 51.9
(2.1)
A 		32.7
(-0.1)
A 		6.1
(-3)
A 		60.3
(3)
A 		54
C 114.7
(3)
A 		13.6
(-2.5)
A 		5
(-3)
A 		46.2
(-0.7)
A 		110
avr 65.8
(3) 		18.4
(-1.8) 		6.4
(-3) 		39.3
(0.3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 9.6
(-2.5)
A 		7.5
(-2.7)
A 		32
(-0.1)
A 		60.4
(3)
A 		4.7
(-3)
A 		6.2
(-2.8)
A 		56
B 29.8
(-0.7)
A 		73.1
(3)
A 		58.4
(1.7)
A 		22.6
(-1.3)
A 		2.7
(-3)
A 		27.6
(-0.9)
A 		70
C 8
(-2.7)
A 		79.4
(3)
A 		3.7
(-3)
A 		13.9
(-2.2)
A 		8.7
(-2.6)
A 		37.3
(-0.3)
A 		76
avr 15.8
(-1.7) 		53.3
(3) 		31.4
(0.3) 		32.3
(0.4) 		5.4
(-3) 		23.7
(-0.7) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 11.2
(3)
A 		2
(-2.8)
A 		2.1
(-2.7)
A 		1.7
(-3)
A 		10
B 16.6
(3)
A 		8.1
(-0.4)
A 		1.4
(-3)
A 		12.9
(1.5)
A 		15
C 38
(3)
A 		3.9
(-2.7)
A 		1.8
(-3)
A 		7.8
(-2)
A 		36
avr 21.9
(3) 		4.7
(-2.1) 		1.8
(-3) 		7.5
(-1.3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.8
(-2.8)
A 		2.7
(-2.4)
A 		7
(-0.6)
A 		15.3
(3)
A 		1.4
(-3)
A 		1.5
(-3)
A 		14
B 10.4
(-0.6)
A 		24.3
(3)
A 		14.2
(0.4)
A 		6
(-1.7)
A 		1.1
(-3)
A 		10.3
(-0.6)
A 		23
C 3
(-2.5)
A 		24.2
(3)
A 		0.9
(-3)
A 		2.8
(-2.5)
A 		2.8
(-2.5)
A 		12.5
(-0)
A 		23
avr 5.1
(-1.7) 		17.1
(3) 		7.4
(-0.8) 		8
(-0.6) 		1.8
(-3) 		8.1
(-0.5) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183135_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12501
Sequence Type Exemplar sequence
Representative Public ID C54F6.7 NCBI
Target Description C54F6.7 /REP_DB=WormBase Gene ID /WP=CE08979 /TR=O16444 /GB=AAG24011.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072534(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072534 NCBI Caenorhabditis elegans Serpentine Receptor, class B (beta) family member (srb-18) (srb-18) mRNA, complete cds. 10/11 None
SNAP00000031619 ENSEMBL cdna:SNAP chromosome:CEL140:V:7517837:7519899:1 10/11 None
GENEFINDER00000031629 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7517837:7519899:1 10/11 None
C54F6.7 ENSEMBL cdna:known chromosome:CEL140:V:7517856:7519899:1 gene:C54F6.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7517856-7519900(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srb family
Gene Symbol srb-18
Ensembl C54F6.7
Entrez Gene 183806 Entrez gene
SwissProt O16444 EMBL-EBI
WormBase CE35260 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504935 Serpentine Receptor, class B (beta) family member (srb-18) [Caenorhabditis elegans] gb|AAG24011.2| Serpentine receptor, class b (beta) protein 18 [Caenorhabditis elegans] sp|O16444|SRB18_CAEEL Serpentine receptor class beta-18 (Protein srb-18) 0.0
blast NP_504935 Serpentine Receptor, class B (beta) family member (srb-18) [Caenorhabditis elegans] gb|AAG24011.2| Serpentine receptor, class b (beta) protein 18 [Caenorhabditis elegans] sp|O16444|SRB18_CAEEL Serpentine receptor class beta-18 (Protein srb-18) 1.0E-173
blast CAE57785 Hypothetical protein CBG00807 [Caenorhabditis briggsae] 1.0E-140
blast NP_504936 Serpentine Receptor, class B (beta) family member (srb-19) [Caenorhabditis elegans] gb|AAX22290.1| Serpentine receptor, class b (beta) protein 19 [Caenorhabditis elegans] 1.0E-114
blast CAE57787 Hypothetical protein CBG00809 [Caenorhabditis briggsae] 1.0E-104
blast NP_504935 Serpentine Receptor, class B (beta) family member (srb-18) [Caenorhabditis elegans] gb|AAG24011.2| Serpentine receptor, class b (beta) protein 18 [Caenorhabditis elegans] sp|O16444|SRB18_CAEEL Serpentine receptor class beta-18 (Protein srb-18) 2.0E-93
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504935.2 7 42-64,76-98,122-144,161-183,208-230,256-278,293-315
C54F6.7 7 42-64,76-98,122-144,161-183,208-230,256-278,293-315
SNAP00000031619 4 38-55,81-103,129-151,166-188
GENEFINDER00000031629 7 53-75,87-109,133-155,172-194,219-241,267-289,304-326
Sequence
Target Sequence 
>C. ELEGANS:183135_AT
gagccaaacacatatctcctatcgtgtttgaatgttcctgtagcatctgtagaagatatg
gccaaggctacaatcgcagtatttccaatcaacttcatttgttttttcctttcaattggt
ctttttcggcattttaaaaagaaggaagaaggctccagtagccgtttcgatattgttcgg
catttcaccgcttctgtcgatgttgaatcctccgaatttctcttccgtactactggaact
caggcagcactcatggcacttttctcagtggcatccttactaatgcgcctcgtgtataat
ttcctgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCAAACACATATCTCCTATCGT 414 385 568 Antisense
GGCTACAATCGCAGTATTTCCAATC 259 539 633 Antisense
TCCTTTCAATTGGTCTTTTTCGGCA 588 591 674 Antisense
GAAGGCTCCAGTAGCCGTTTCGATA 551 333 715 Antisense
ATATTGTTCGGCATTTCACCGCTTC 566 17 737 Antisense
GCTTCTGTCGATGTTGAATCCTCCG 598 305 757 Antisense
GAATTTCTCTTCCGTACTACTGGAA 153 323 781 Antisense
ACTGGAACTCAGGCAGCACTCATGG 352 95 799 Antisense
ATGGCACTTTTCTCAGTGGCATCCT 399 53 820 Antisense
AGTGGCATCCTTACTAATGCGCCTC 73 59 834 Antisense
TGCGCCTCGTGTATAATTTCCTGCC 579 583 851 Antisense
Sequence Source Affymetrix Proprietary Database