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[183133_at]

Description F46H6.4 /REP_DB=WormBase Gene ID /WP=CE04598 /TR=Q9GYN9 /GB=AAF99948.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 18      6grp_total_sub > Hat      6grp_cgc > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 38.9
(-1.4)
A 		30.6
(-2)
A 		17.5
(-3)
A 		96.1
(3)
A 		79
B 46.2
(-1.1)
A 		83.4
(2.4)
A 		26.3
(-3)
A 		89.7
(3)
A 		63
C 10.5
(-3)
A 		39.6
(-0.5)
A 		44.7
(-0)
A 		79.2
(3)
A 		69
avr 31.9
(-2.8) 		51.2
(-0.8) 		29.5
(-3) 		88.3
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 12.8
(-2.7)
A 		96.5
(3)
A 		20.8
(-2.2)
A 		10
(-2.9)
A 		10
(-2.9)
A 		9
(-3)
A 		88
B 37.1
(-0.3)
A 		63.7
(3)
A 		16
(-3)
A 		43.7
(0.5)
A 		53.7
(1.7)
A 		54.5
(1.8)
A 		48
C 24.3
(-2)
A 		15.2
(-2.9)
A 		17.3
(-2.7)
A 		13.8
(-3)
A 		58.2
(1.1)
A 		79.5
(3)
A 		66
avr 24.7
(-2) 		58.5
(3) 		18
(-3) 		22.5
(-2.3) 		40.6
(0.3) 		47.7
(1.4) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 14.2
(3)
A 		6.6
(-1.8)
A 		4.6
(-3)
A 		14.1
(2.9)
A 		10
B 14.7
(0.6)
A 		20.6
(3)
A 		6.1
(-3)
A 		19.1
(2.4)
A 		15
C 3.5
(-3)
A 		11.4
(0.9)
A 		15.6
(3)
A 		13.4
(1.9)
A 		12
avr 10.8
(-1.2) 		12.9
(0.7) 		8.8
(-3) 		15.5
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 2.4
(-3)
A 		34.3
(3)
A 		4.5
(-2.6)
A 		2.5
(-2.9)
A 		3
(-2.9)
A 		2.2
(-3)
A 		32
B 12.9
(0)
A 		21.2
(2.8)
A 		3.9
(-3)
A 		11.6
(-0.4)
A 		21.8
(3)
A 		20.3
(2.5)
A 		18
C 9
(-1.4)
A 		4.7
(-2.5)
A 		4.4
(-2.6)
A 		2.8
(-3)
A 		18.8
(1)
A 		26.6
(3)
A 		24
avr 8.1
(-1.6) 		20.1
(3) 		4.3
(-3) 		5.6
(-2.5) 		14.5
(0.9) 		16.4
(1.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183133_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16981
Sequence Type Exemplar sequence
Representative Public ID F46H6.4 NCBI
Target Description F46H6.4 /REP_DB=WormBase Gene ID /WP=CE04598 /TR=Q9GYN9 /GB=AAF99948.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076372(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076372 NCBI Caenorhabditis elegans F46H6.4 (F46H6.4) mRNA, complete cds. 11/11 None
F46H6.4 ENSEMBL cdna:known chromosome:CEL140:X:4504222:4504619:-1 gene:F46H6.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F46H6.2b.1 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4504222-4504620(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F46H6.4
Entrez Gene 3565751 Entrez gene
SwissProt Q9GYN9 EMBL-EBI
WormBase CE04598 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF99948 Hypothetical protein F46H6.4 [Caenorhabditis elegans] ref|NP_508773.1| F46H6.4 [Caenorhabditis elegans] 2.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508773.1 2 12-34,38-57
F46H6.4 2 12-34,38-57
Sequence
Target Sequence 
>C. ELEGANS:183133_AT
ttatccataagggcttttgcactatacaactaacactcccacccccgtctctcgttcttt
tcaattctctctatttctatctctttctcgtgttgttgtgtttcatcagctcgaaagaca
cgtatttcaatttccacccattagtctcgcattcaaacgcggcaaataaccgcaacgcat
caaagtgccgcgtcgcggtcctcgccccgcggaataaagaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCCATAAGGGCTTTTGCACTAT 259 679 74 Antisense
TGCACTATACAACTAACACTCCCAC 513 575 91 Antisense
TTCAATTCTCTCTATTTCTATCTCT 555 685 133 Antisense
TATCTCTTTCTCGTGTTGTTGTGTT 585 659 151 Antisense
GTGTTGTTGTGTTTCATCAGCTCGA 401 485 163 Antisense
GTATTTCAATTTCCACCCATTAGTC 660 451 195 Antisense
CACCCATTAGTCTCGCATTCAAACG 115 195 208 Antisense
TCTCGCATTCAAACGCGGCAAATAA 384 611 218 Antisense
TAACCGCAACGCATCAAAGTGCCGC 301 639 240 Antisense
CATCAAAGTGCCGCGTCGCGGTCCT 426 209 251 Antisense
TCCTCGCCCCGCGGAATAAAGAACA 68 593 272 Antisense
Sequence Source Affymetrix Proprietary Database