[Home] | [Total List]

[183130_at]

Description C11D2.3 /REP_DB=WormBase Gene ID /WP=CE16844 /TR=O45068 /GB=AAC02572.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 15      4grp_total > 09      6grp_total_sub > Decrease      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 19.3
(-2.2)
A 		5.7
(-3)
A 		37.6
(-1.1)
A 		108.3
(3)
P 		103
B 18
(-3)
A 		53.2
(2.2)
A 		25.3
(-1.9)
A 		59
(3)
A 		41
C 30.9
(-1.5)
A 		14.1
(-3)
A 		30.7
(-1.5)
A 		79.7
(3)
A 		66
avr 22.7
(-3) 		24.3
(-2.8) 		31.2
(-2.1) 		82.3
(3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 62.1
(3)
A 		40
(0.4)
A 		11.5
(-3)
A 		38.2
(0.2)
A 		31.6
(-0.6)
A 		39.8
(0.4)
A 		51
B 52.6
(2.4)
A 		31.4
(-0.5)
A 		57
(3)
A 		16.8
(-2.5)
A 		45
(1.4)
A 		13.3
(-3)
A 		44
C 32.6
(-0.2)
A 		58.2
(3)
A 		36.5
(0.3)
A 		16.8
(-2.2)
A 		10.7
(-3)
A 		23.2
(-1.4)
A 		48
avr 49.1
(3) 		43.2
(1.6) 		35
(-0.4) 		23.9
(-3) 		29.1
(-1.8) 		25.4
(-2.6) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 7
(-0.6)
A 		1.2
(-3)
A 		9.8
(0.5)
A 		15.9
(3)
P 		15
B 5.7
(-3)
A 		13.1
(3)
A 		5.9
(-2.8)
A 		12.6
(2.6)
A 		7
C 10.2
(1)
A 		4
(-3)
A 		10.7
(1.3)
A 		13.4
(3)
A 		9
avr 7.6
(-1.9) 		6.1
(-3) 		8.8
(-0.9) 		14
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 11.4
(1.6)
A 		14.2
(3)
A 		2.5
(-3)
A 		9.7
(0.7)
A 		9.5
(0.6)
A 		9.7
(0.7)
A 		12
B 18.3
(3)
A 		10.4
(-0.4)
A 		13.8
(1)
A 		4.5
(-3)
A 		18.3
(3)
A 		5
(-2.8)
A 		14
C 12.1
(0.7)
A 		17.7
(3)
A 		9.3
(-0.5)
A 		3.4
(-3)
A 		3.5
(-3)
A 		7.8
(-1.2)
A 		14
avr 13.9
(2.9) 		14.1
(3) 		8.5
(-1.1) 		5.9
(-3) 		10.4
(0.3) 		7.5
(-1.8) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183130_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10641
Sequence Type Exemplar sequence
Representative Public ID C11D2.3 NCBI
Target Description C11D2.3 /REP_DB=WormBase Gene ID /WP=CE16844 /TR=O45068 /GB=AAC02572.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068522
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030426 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6152421:6154607:1 None
C11D2.3 ENSEMBL cdna:known chromosome:CEL140:IV:6154090:6154607:1 gene:C11D2.3 None
NM_068522 NCBI Caenorhabditis elegans C11D2.3 (C11D2.3) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6153814-6154613(+) 64.33 100.0
Public Domain and Genome References
Gene Title
Ensembl C11D2.3
Entrez Gene 182512 Entrez gene
SwissProt O45068 EMBL-EBI
WormBase CE32307 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC02572 Hypothetical protein C11D2.3 [Caenorhabditis elegans] ref|NP_500923.2| C11D2.3 [Caenorhabditis elegans] 3.0E-65
blast AAC02572 Hypothetical protein C11D2.3 [Caenorhabditis elegans] ref|NP_500923.2| C11D2.3 [Caenorhabditis elegans] 3.0E-61
blast CAE61597 Hypothetical protein CBG05512 [Caenorhabditis briggsae] 2.0E-47
blast CAE61597 Hypothetical protein CBG05512 [Caenorhabditis briggsae] 1.0E-33
Sequence
Target Sequence 
>C. ELEGANS:183130_AT
ggagcagaatgttccctttgaaatcgatgtggaaacgcgctccacagccaattaaaaccg
ccccgcctcccacattagttttgccgattttgtcagctatcaaacatttttgttattttt
tctgttgtttgttaaatgattttcgtgccgaattaattgttataaatgcatgtttaggcc
agcaggaaacacatcaaaatagacggagaatgattagaaaatggaacattgagcagcaga
ataataaaatcagtgaggctcttggatgcttggctgtttgcaatgaagtaaccgagaagt
atcaatgtgctctggacaattcttttcaggttttagtcgatgatttctcggagaaagcct
ttaagttgagcagcttgacaactcaacttcacgcattacgacagactcatcacgcgaatc
agcaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCAGAATGTTCCCTTTGAAATC 692 519 38 Antisense
GCTCCACAGCCAATTAAAACCGCCC 91 299 76 Antisense
CTCCCACATTAGTTTTGCCGATTTT 594 231 104 Antisense
GTTTTGCCGATTTTGTCAGCTATCA 646 447 115 Antisense
TTTAGGCCAGCAGGAAACACATCAA 160 671 210 Antisense
CAGTGAGGCTCTTGGATGCTTGGCT 465 207 288 Antisense
GATGCTTGGCTGTTTGCAATGAAGT 588 413 302 Antisense
AATGTGCTCTGGACAATTCTTTTCA 277 163 341 Antisense
CAGCTTGACAACTCAACTTCACGCA 681 203 408 Antisense
TCACGCATTACGACAGACTCATCAC 164 627 426 Antisense
GACTCATCACGCGAATCAGCAAGTT 25 373 441 Antisense
Sequence Source Affymetrix Proprietary Database