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[183129_at]

Description C15C7.4 /REP_DB=WormBase Gene ID /WP=CE03990 /TR=Q18010 /GB=AAK39166.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 227.8
(3)
P 		74.8
(-3)
A 		83.5
(-2.7)
A 		159.8
(0.3)
A 		153
B 196.6
(3)
P 		116.2
(-2)
A 		99.3
(-3)
A 		164.9
(1)
P 		97
C 188.2
(1.5)
P 		25.1
(-3)
A 		84.1
(-1.4)
A 		243.9
(3)
A 		219
avr 204.2
(3) 		72
(-3) 		89
(-2.2) 		189.5
(2.3) 		132

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 277
1 2 3 4 5 6 range
A 207.1
(2.8)
P 		106.7
(-0.7)
A 		212.1
(3)
P 		39.6
(-3)
A 		101.2
(-0.9)
A 		62.7
(-2.2)
A 		173
B 209.4
(0.5)
P 		316.2
(3)
P 		219.5
(0.7)
P 		117.6
(-1.6)
P 		59.8
(-3)
A 		101.3
(-2)
P 		256
C 106.9
(-1.4)
A 		288.6
(3)
P 		91.7
(-1.7)
A 		226.6
(1.5)
P 		79.3
(-2)
A 		38.8
(-3)
A 		250
avr 174.5
(0.8) 		237.2
(3) 		174.4
(0.8) 		127.9
(-0.9) 		80.1
(-2.6) 		67.6
(-3) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 82.9
(3)
P 		16.2
(-3)
A 		21.8
(-2.5)
A 		23.4
(-2.4)
A 		67
B 62.7
(3)
P 		28.7
(-2.1)
A 		23
(-3)
A 		35.1
(-1.2)
P 		40
C 62.3
(3)
P 		7.2
(-3)
A 		29.3
(-0.6)
A 		41.1
(0.7)
A 		55
avr 69.3
(3) 		17.4
(-3) 		24.7
(-2.2) 		33.2
(-1.2) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 38.2
(1.7)
P 		38
(1.6)
A 		46.2
(3)
P 		10.1
(-3)
A 		30.5
(0.4)
A 		15.3
(-2.1)
A 		36
B 72.9
(0.6)
P 		105.3
(3)
P 		53.3
(-0.9)
P 		31.1
(-2.5)
P 		24.3
(-3)
A 		37.8
(-2)
P 		81
C 39.6
(-0.9)
A 		88.1
(3)
P 		23.3
(-2.2)
A 		45.6
(-0.4)
P 		25.6
(-2)
A 		13
(-3)
A 		75
avr 50.2
(0.1) 		77.1
(3) 		40.9
(-0.9) 		28.9
(-2.2) 		26.8
(-2.5) 		22
(-3) 		55
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183129_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18201
Sequence Type Exemplar sequence
Representative Public ID C15C7.4 NCBI
Target Description C15C7.4 /REP_DB=WormBase Gene ID /WP=CE03990 /TR=Q18010 /GB=AAK39166.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076139(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076139 NCBI Caenorhabditis elegans C15C7.4 (C15C7.4) mRNA, complete cds. 11/11 None
SNAP00000025243 ENSEMBL cdna:SNAP chromosome:CEL140:X:3146465:3147217:1 11/11 None
GENEFINDER00000025256 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3146465:3147217:1 11/11 None
C15C7.4 ENSEMBL cdna:known chromosome:CEL140:X:3146564:3147079:1 gene:C15C7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3146563-3147079(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C7.4
Entrez Gene 182633 Entrez gene
SwissProt Q18010 EMBL-EBI
WormBase CE03990 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39166 Hypothetical protein C15C7.4 [Caenorhabditis elegans] ref|NP_508540.1| C15C7.4 [Caenorhabditis elegans] 3.0E-91
blast AAK39166 Hypothetical protein C15C7.4 [Caenorhabditis elegans] ref|NP_508540.1| C15C7.4 [Caenorhabditis elegans] 1.0E-80
blast CAE68385 Hypothetical protein CBG14142 [Caenorhabditis briggsae] 2.0E-14
blast CAE68385 Hypothetical protein CBG14142 [Caenorhabditis briggsae] 4.0E-12
Sequence
Target Sequence 
>C. ELEGANS:183129_AT
gttcaatgactttctcgatatggtggagtatcaaaccaataagaaaaaggagagaatcaa
caaattatattatacaccaaatgccgatgaatctgttgacgagcagcttgtaacagatcg
ccacggtcaattctacttgaaatgtattgcgagcaacagccaacaaggagacggtcaaac
gcgttgtcctctgaaacattcgaaatcccgtccaggatgccattttacttatgacttcaa
gtataacgaaactatccagggatgttatgaagatgacggtgtctccaaagacttttgcaa
cgatgaatgcaaagttgaagtcaagagttacgccgccgaaggcgataacgtcaagaaata
cccagtcgcattctgctgctgccgatcatcccattgcaatgcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAATGACTTTCTCGATATGGTG 31 445 15 Antisense
AATGCCGATGAATCTGTTGACGAGC 465 165 94 Antisense
GAGCAGCTTGTAACAGATCGCCACG 211 389 115 Antisense
ATCGCCACGGTCAATTCTACTTGAA 420 37 131 Antisense
AGGAGACGGTCAAACGCGTTGTCCT 357 55 180 Antisense
CGCGTTGTCCTCTGAAACATTCGAA 49 257 194 Antisense
AATCCCGTCCAGGATGCCATTTTAC 414 145 218 Antisense
GAAGATGACGGTGTCTCCAAAGACT 616 335 283 Antisense
TGAAGTCAAGAGTTACGCCGCCGAA 500 573 330 Antisense
AAGAAATACCCAGTCGCATTCTGCT 300 153 367 Antisense
TGCCGATCATCCCATTGCAATGCAG 145 585 394 Antisense
Sequence Source Affymetrix Proprietary Database