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[183128_at]

Description H03G16.4 /REP_DB=WormBase Gene ID /WP=CE19914 /TR=Q9XU20 /GB=CAB07228.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 73      4grp_total > 21      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 12.6
(-1.8)
A 		46.7
(3)
A 		6.3
(-2.7)
A 		3.8
(-3)
A 		43
B 19.7
(3)
A 		2.5
(-3)
A 		14.3
(1.1)
A 		17.6
(2.3)
A 		17
C 52.8
(0.5)
A 		10.8
(-3)
A 		14.1
(-2.7)
A 		83.2
(3)
A 		72
avr 28.4
(1.3) 		20
(-0.8) 		11.6
(-3) 		34.9
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 6.5
(-2.7)
A 		4.2
(-3)
A 		52.6
(3)
A 		24.8
(-0.4)
A 		48.2
(2.5)
A 		5.7
(-2.8)
A 		48
B 8.5
(-3)
A 		23.4
(-0.9)
A 		34
(0.6)
A 		50.8
(3)
A 		26.4
(-0.5)
A 		29.9
(0)
A 		42
C 25.1
(-0.8)
A 		33.3
(3)
A 		21.7
(-2.4)
A 		20.4
(-3)
A 		28.2
(0.6)
A 		30.5
(1.7)
A 		13
avr 13.4
(-3) 		20.3
(-1.2) 		36.1
(3) 		32
(1.9) 		34.3
(2.5) 		22
(-0.7) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 4.6
(-0.5)
A 		10.1
(3)
A 		1.7
(-2.3)
A 		0.6
(-3)
A 		10
B 6.3
(3)
A 		0.6
(-3)
A 		3.3
(-0.2)
A 		3.8
(0.4)
A 		6
C 17.5
(3)
A 		3.1
(-3)
A 		4.9
(-2.3)
A 		14
(1.5)
A 		14
avr 9.5
(3) 		4.6
(-1.7) 		3.3
(-3) 		6.1
(-0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.2
(-3)
A 		1.5
(-2.9)
A 		11.5
(1.6)
A 		6.3
(-0.7)
A 		14.5
(3)
A 		1.4
(-2.9)
A 		13
B 2.9
(-3)
A 		7.8
(-0.2)
A 		8.3
(0.1)
A 		13.5
(3)
A 		10.7
(1.4)
A 		11.1
(1.6)
A 		11
C 9.3
(2.1)
A 		10.2
(3)
A 		5.5
(-1.6)
A 		4.1
(-3)
A 		9.1
(1.9)
A 		10.2
(3)
A 		6
avr 4.5
(-3) 		6.5
(-1.3) 		8.4
(0.4) 		8
(0) 		11.4
(3) 		7.6
(-0.3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183128_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17475
Sequence Type Exemplar sequence
Representative Public ID H03G16.4 NCBI
Target Description H03G16.4 /REP_DB=WormBase Gene ID /WP=CE19914 /TR=Q9XU20 /GB=CAB07228.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078101 NCBI Caenorhabditis elegans H03G16.4 (H03G16.4) mRNA, complete cds. 11/11 None
SNAP00000037552 ENSEMBL cdna:SNAP chromosome:CEL140:X:15058425:15060290:-1 11/11 None
GENEFINDER00000037562 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15058425:15060290:-1 11/11 None
H03G16.4 ENSEMBL cdna:known chromosome:CEL140:X:15058425:15060290:-1 gene:H03G16.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15058424-15060290(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H03G16.4
Entrez Gene 186676 Entrez gene
SwissProt Q9XU20 EMBL-EBI
WormBase CE19914 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07228 Hypothetical protein H03G16.4 [Caenorhabditis elegans] ref|NP_510502.1| H03G16.4 [Caenorhabditis elegans] 0.0
blast CAA20926 Hypothetical protein C18B12.5 [Caenorhabditis elegans] ref|NP_510499.1| C18B12.5 [Caenorhabditis elegans] 2.0E-74
blast NP_500676 Y9C9A.8 [Caenorhabditis elegans] gb|AAF60932.1| Hypothetical protein Y9C9A.8 [Caenorhabditis elegans] 3.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 9.5E-24
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 1.4E-8
Sequence
Target Sequence 
>C. ELEGANS:183128_AT
gctggacttccaaaactgcagcccggatgaacatgacaagttctgccgactgtttgtggg
aaaaatcgagaacatctccccaacagaaatatatcttcgattctggacatgcaaggcagt
tgcttcatttctgaagttgtgcagtgctgaccagcttaaacatattgatttacactttca
tgacgaagaattgctggagtataacgaatttgttaatcttaaccactggaagaacgctaa
atatctaaaattgtattgcaagtatttgcccactagattttaccaaaatctttcgaattt
caaagttttgtcactaaggccagatcaatcatcagtagaagatattgaccaaattaaaaa
gctaatctccgagccgaatcaactttcagcgatggtttttcaaagtgttgcagctcttga
cactgtttacattgcgtctgcttttggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGGACTTCCAAAACTGCAGCCCG 224 293 579 Antisense
AACTGCAGCCCGGATGAACATGACA 20 143 592 Antisense
CAAGTTCTGCCGACTGTTTGTGGGA 163 185 615 Antisense
AAATCGAGAACATCTCCCCAACAGA 129 119 641 Antisense
TATATCTTCGATTCTGGACATGCAA 482 659 668 Antisense
GCAAGGCAGTTGCTTCATTTCTGAA 709 321 689 Antisense
GAAGTTGTGCAGTGCTGACCAGCTT 587 337 711 Antisense
GTATTTGCCCACTAGATTTTACCAA 677 451 840 Antisense
TAATCTCCGAGCCGAATCAACTTTC 451 635 941 Antisense
GTTGCAGCTCTTGACACTGTTTACA 570 439 985 Antisense
GTTTACATTGCGTCTGCTTTTGGCC 250 449 1003 Antisense
Sequence Source Affymetrix Proprietary Database