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[183126_s_at] Casein kinase /// ---

Description F54H5.2 /REP_DB=WormBase Gene ID /WP=CE01965 /TR=P91332 /GB=AAB38092.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 30      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 71.8
(2.3)
P 		75.4
(2.7)
P 		23.9
(-3)
A 		78.1
(3)
A 		54
B 92.4
(3)
P 		31
(-2.3)
A 		22.8
(-3)
A 		33.3
(-2.1)
A 		70
C 85.8
(3)
P 		13
(-3)
A 		32.6
(-1.4)
A 		64.7
(1.3)
P 		73
avr 83.3
(3) 		39.8
(-1.6) 		26.4
(-3) 		58.7
(0.4) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 52.7
(0.8)
A 		53
(0.9)
P 		59.2
(1.4)
P 		10.6
(-3)
A 		47.4
(0.4)
P 		76.3
(3)
A 		66
B 39.5
(-1.9)
P 		42.8
(-1)
P 		58.2
(3)
P 		50.8
(1.1)
P 		35.2
(-3)
P 		47.6
(0.2)
A 		23
C 48.7
(3)
P 		23.2
(-1.4)
A 		42.9
(2)
A 		48.5
(3)
A 		38.1
(1.2)
A 		13.7
(-3)
A 		35
avr 47
(0.7) 		39.7
(-1.9) 		53.4
(3) 		36.6
(-3) 		40.2
(-1.7) 		45.9
(0.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 26.1
(3)
P 		16.4
(0.1)
P 		6.2
(-3)
A 		11.4
(-1.4)
A 		20
B 29.5
(3)
P 		7.6
(-2.4)
A 		5.3
(-3)
A 		7.1
(-2.6)
A 		24
C 28.4
(3)
P 		3.7
(-3)
A 		11.4
(-1.1)
A 		10.9
(-1.3)
P 		25
avr 28
(3) 		9.2
(-2.5) 		7.6
(-3) 		9.8
(-2.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.7
(-0.4)
A 		18.8
(3)
P 		12.9
(0.8)
P 		2.7
(-3)
A 		14.3
(1.3)
P 		18.6
(2.9)
A 		16
B 13.7
(-2.7)
P 		14.3
(-1.9)
P 		14.1
(-2.2)
P 		13.5
(-3)
P 		14.3
(-1.9)
P 		17.8
(3)
A 		4
C 18
(3)
P 		7.1
(-1.9)
A 		10.9
(-0.2)
A 		9.8
(-0.7)
A 		12.3
(0.4)
A 		4.6
(-3)
A 		13
avr 13.8
(3) 		13.4
(2.5) 		12.6
(1.6) 		8.7
(-3) 		13.6
(2.8) 		13.7
(2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183126_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5059
Sequence Type Exemplar sequence
Representative Public ID F54H5.2 NCBI
Target Description F54H5.2 /REP_DB=WormBase Gene ID /WP=CE01965 /TR=P91332 /GB=AAB38092.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062946(11), NM_062932(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062946 NCBI Caenorhabditis elegans F54H5.2 (F54H5.2) mRNA, complete cds. 11/11 None
NM_062932 NCBI Caenorhabditis elegans C56C10.6 (C56C10.6) mRNA, complete cds. 11/11 A 
SNAP00000010666 ENSEMBL cdna:SNAP chromosome:CEL140:II:6627406:6629201:1 11/11 None
GENEFINDER00000010669 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6627428:6629201:1 11/11 None
SNAP00000022061 ENSEMBL cdna:SNAP chromosome:CEL140:II:6579647:6581206:-1 11/11 None
GENEFINDER00000022086 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6579647:6582917:-1 11/11 None
C56C10.6 ENSEMBL cdna:known chromosome:CEL140:II:6579647:6581256:-1 gene:C56C10.6 11/11 A 
F54H5.2 ENSEMBL cdna:known chromosome:CEL140:II:6627428:6629201:1 gene:F54H5.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6627424-6629198(+) 100.0 100.0
chrII:6579643-6581181(-) 97.18 97.18
Public Domain and Genome References
Gene Title Casein kinase

Ensembl C56C10.6
F54H5.2
Entrez Gene 174087 Entrez gene
186263 Entrez gene
SwissProt Q18882 EMBL-EBI
P91332 EMBL-EBI
WormBase CE29490 Wormbase
CE01965 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB38092 Hypothetical protein F54H5.2 [Caenorhabditis elegans] ref|NP_495347.1| F54H5.2 [Caenorhabditis elegans] 0.0
blast AAA68774 Hypothetical protein C56C10.6 [Caenorhabditis elegans] ref|NP_495333.1| C56C10.6 [Caenorhabditis elegans] 0.0
blast CAE65958 Hypothetical protein CBG11140 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 5.6E-18
Pfam IPR000719 EMBL-EBI Protein kinase 5.6E-18
Pfam IPR000719 EMBL-EBI Protein kinase 5.6E-18
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000022086 1 29-51
Sequence
Target Sequence 
>C. ELEGANS:183126_S_AT
gtgctgagcagggaagagtggacgatctttggagcatcttgtatctgcttgctgagctcc
gtggacctcttccatggtcatcgcaaaatgataagcgagtcgttggagagatgaaaagac
tacattccgatgaagtcgttcttcaaaatagtccgatggagttcttagagattgccaagt
acttgagaagtcttacatacttccaccgcccggattaccacaaaattttcatgcttctca
tttcgatcatgagtaaaggaaaattttcatggaatgatccatttgattgggaaatgccta
tctccacaccaccatcaaaatcaattacaaagtcgccaaatcagttgagtaaggagacaa
tcaaaaaagcaagtagagagaagacattgagcaaggagaagacgagcaaagaagacatta
agacggcacagaaaacaagtattgagaaggatgtaaaggagaagcttagtaaggaaatgg
cgagcaaggagaaaatcagtctttcggcggagaaaattaatatgtcggcagaaaagatag
aagaagataataagaaggaagaatacatgagaatgttgccatttgatcctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCTGAGCAGGGAAGAGTGGACGA 676 477 665 Antisense
GAAGAGTGGACGATCTTTGGAGCAT 599 337 677 Antisense
TAAGCGAGTCGTTGGAGAGATGAAA 410 637 756 Antisense
ACTACATTCCGATGAAGTCGTTCTT 493 99 783 Antisense
GAAGTCGTTCTTCAAAATAGTCCGA 15 99 796 Antisense
TAGTCCGATGGAGTTCTTAGAGATT 175 653 813 Antisense
GTTCTTAGAGATTGCCAAGTACTTG 2 445 825 Antisense
GAGAAGTCTTACATACTTCCACCGC 485 391 849 Antisense
GCCCGGATTACCACAAAATTTTCAT 166 259 872 Antisense
TGATTGGGAAATGCCTATCTCCACA 627 563 948 Antisense
GAGAATGTTGCCATTTGATCCTGAT 580 391 1233 Antisense
Sequence Source Affymetrix Proprietary Database