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[183124_at]

Description K10C2.5 /REP_DB=WormBase Gene ID /WP=CE04751 /TR=Q94273 /GB=AAK39260.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 50      6grp_cgc > 43      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 489
1 2 3 4 range
A 18.3
(-3)
A 		492.7
(3)
P 		251.8
(-0)
P 		147.9
(-1.4)
A 		474
B 82.7
(-1.9)
A 		435.3
(3)
P 		351.1
(1.8)
P 		3.7
(-3)
A 		432
C 69.4
(-3)
A 		442.3
(3)
P 		296.5
(0.7)
P 		126.2
(-2.1)
A 		373
avr 56.8
(-3) 		456.8
(3) 		299.8
(0.6) 		92.6
(-2.5) 		400

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 175.7
(2.7)
A 		183.3
(3)
P 		95.1
(-0.3)
P 		24.6
(-3)
A 		84.2
(-0.7)
A 		118
(0.5)
A 		159
B 183.6
(2.1)
M 		205.4
(3)
P 		172.4
(1.6)
A 		139
(0.2)
P 		107
(-1.2)
P 		64.2
(-3)
P 		141
C 117.2
(-1.2)
A 		228
(3)
P 		160.3
(0.5)
P 		134.6
(-0.5)
A 		80
(-2.6)
P 		68.6
(-3)
A 		159
avr 158.8
(0.7) 		205.6
(3) 		142.6
(-0.1) 		99.4
(-2.2) 		90.4
(-2.7) 		83.6
(-3) 		122
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 126
1 2 3 4 range
A 6.7
(-3)
A 		106.9
(3)
P 		65.8
(0.5)
P 		21.7
(-2.1)
A 		100
B 26.4
(-1.6)
A 		107.5
(3)
P 		81.4
(1.5)
P 		0.8
(-3)
A 		107
C 23
(-2.9)
A 		127.2
(3)
P 		103.3
(1.6)
P 		21.3
(-3)
A 		106
avr 18.7
(-2.8) 		113.9
(3) 		83.5
(1.2) 		14.6
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 32.4
(-0.3)
A 		65.2
(3)
P 		20.7
(-1.5)
P 		6.2
(-3)
A 		25.4
(-1)
A 		28.7
(-0.7)
A 		59
B 63.9
(2.4)
M 		68.4
(3)
P 		41.9
(-0.6)
A 		36.8
(-1.3)
P 		43.5
(-0.4)
P 		23.9
(-3)
P 		45
C 43.5
(-0.4)
A 		69.6
(3)
P 		40.8
(-0.7)
P 		27.1
(-2.5)
A 		25.9
(-2.6)
P 		23
(-3)
A 		47
avr 46.6
(0.1) 		67.7
(3) 		34.5
(-1.5) 		23.4
(-3) 		31.6
(-1.9) 		25.2
(-2.8) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183124_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16688
Sequence Type Exemplar sequence
Representative Public ID K10C2.5 NCBI
Target Description K10C2.5 /REP_DB=WormBase Gene ID /WP=CE04751 /TR=Q94273 /GB=AAK39260.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076683(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076683 NCBI Caenorhabditis elegans GRound-Like (grd related) family member (grl-6) (grl-6) mRNA, complete cds. 11/11 None
K10C2.5 ENSEMBL cdna:known chromosome:CEL140:X:6449991:6450894:-1 gene:K10C2.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032621 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6449990-6450894(-) 87.28 100.0
Public Domain and Genome References
Gene Title
Gene Symbol grl-6
Ensembl K10C2.5
Entrez Gene 187253 Entrez gene
SwissProt Q94273 EMBL-EBI
WormBase CE04751 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39260 Ground-like (grd related) protein 6 [Caenorhabditis elegans] ref|NP_509084.1| GRound-Like (grd related) family member (grl-6) [Caenorhabditis elegans] 5.0E-66
blast CAE61260 Hypothetical protein CBG05066 [Caenorhabditis briggsae] 1.0E-60
blast CAE61854 Hypothetical protein CBG05832 [Caenorhabditis briggsae] 5.0E-23
Protein Domains
Database ID Description E-Value
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 4.6E-33
Sequence
Target Sequence 
>C. ELEGANS:183124_AT
gaatgccatgtgctgcaccgatgccaatgccgatgccaatgccagtctgtcctccacctc
caccatgcccggctcaattctgtccaccaccaccaatttgtcctccgcctccaccaccgc
caatgccatgccctccaccacctccaccaatgccgagaccatcttgcccgtgtatgatgc
aacgaccatcgttctacccatcatatgttccccagtactatcagccaatgatgcctcagc
caatgccaacagctggaggatgtggaggtggtgcagttgtaccatcagtcagaattccag
ctcagaacgattgttgctgtggctgctcatcgccatgcaagtacaaaagtgtgagacgcg
ccgcatttgcagccaaaacaatcgacccttcgtgtaacagttccgaactgaaaaacatta
tccttgataatattagcgaagatgcaagtgaatcaaagaggaacattcagaaaattgccg
aagaaacactaggccatgaggtgaacgttatttgtggtacaggagaattcagttacatag
ctcataccgatacattctgcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCCATGTGCTGCACCGATGCC 205 331 125 Antisense
AGACCATCTTGCCCGTGTATGATGC 205 71 280 Antisense
TGATGCAACGACCATCGTTCTACCC 153 567 299 Antisense
TATCAGCCAATGATGCCTCAGCCAA 430 657 343 Antisense
GTACCATCAGTCAGAATTCCAGCTC 304 457 403 Antisense
AGAACGATTGTTGCTGTGGCTGCTC 668 73 428 Antisense
GCTGCTCATCGCCATGCAAGTACAA 212 297 446 Antisense
AAAGTGTGAGACGCGCCGCATTTGC 102 121 470 Antisense
CAGCCAAAACAATCGACCCTTCGTG 305 137 494 Antisense
TCGACCCTTCGTGTAACAGTTCCGA 34 573 506 Antisense
TAGCTCATACCGATACATTCTGCCA 685 651 662 Antisense
Sequence Source Affymetrix Proprietary Database