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[183122_at]

Description C45E5.1 /REP_DB=WormBase Gene ID /WP=CE08729 /TR=Q18645 /GB=AAC24287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 15      6grp_high1_10_10 > 50      6grp_highest_nonorm > 43      6grp_total > 40      4grp_total > 57      6grp_highest_sub > 03      6grp_high1_sub > 03_04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 451
1 2 3 4 range
A 90.1
(-2.5)
A 		311.6
(1.1)
P 		427
(3)
P 		60.7
(-3)
A 		366
B 109.1
(-1.6)
P 		373.9
(3)
P 		359.5
(2.8)
P 		26.3
(-3)
A 		348
C 97.6
(-2.6)
P 		458
(2.7)
P 		477.5
(3)
P 		67
(-3)
M 		411
avr 98.9
(-2.2) 		381.2
(2.3) 		421.3
(3) 		51.3
(-3) 		370

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1412
1 2 3 4 5 6 range
A 1160
(-0)
P 		1375.7
(1)
P 		1766.3
(3)
P 		1636.6
(2.3)
P 		798.8
(-1.9)
P 		572.8
(-3)
P 		1194
B 936.4
(-0.8)
P 		1268.1
(1.2)
P 		1567.3
(3)
P 		1355.6
(1.7)
P 		860.5
(-1.2)
P 		567.1
(-3)
P 		1000
C 1198.3
(-0.4)
P 		1493.8
(0.9)
P 		1979.4
(3)
P 		1713.9
(1.9)
P 		773.5
(-2.2)
P 		592.9
(-3)
P 		1387
avr 1098.2
(-0.4) 		1379.2
(1) 		1771
(3) 		1568.7
(2) 		810.9
(-1.8) 		577.6
(-3) 		1193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 32.8
(-1.6)
A 		67.6
(0.4)
P 		111.6
(3)
P 		8.9
(-3)
A 		103
B 34.8
(-1)
P 		92.3
(3)
P 		83.3
(2.4)
P 		5.6
(-3)
A 		87
C 32.3
(-2.2)
P 		131.7
(1.7)
P 		166.4
(3)
P 		11.3
(-3)
M 		155
avr 33.3
(-1.7) 		97.2
(1.8) 		120.4
(3) 		8.6
(-3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 364
1 2 3 4 5 6 range
A 213.8
(-1.7)
P 		489.3
(3)
P 		384.7
(1.2)
P 		415.1
(1.7)
P 		241.1
(-1.3)
P 		139.5
(-3)
P 		350
B 325.8
(0.3)
P 		422.1
(3)
P 		380.6
(1.8)
P 		359
(1.2)
P 		349.6
(0.9)
P 		211.5
(-3)
P 		211
C 444.2
(1.8)
P 		455.8
(2.1)
P 		503.8
(3)
P 		344.7
(-0.1)
P 		250.3
(-2)
P 		198.5
(-3)
P 		305
avr 327.9
(0.2) 		455.7
(3) 		423
(2.3) 		372.9
(1.2) 		280.3
(-0.9) 		183.2
(-3) 		273
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183122_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10966
Sequence Type Exemplar sequence
Representative Public ID C45E5.1 NCBI
Target Description C45E5.1 /REP_DB=WormBase Gene ID /WP=CE08729 /TR=Q18645 /GB=AAC24287.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068456(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068456 NCBI Caenorhabditis elegans C45E5.1 (C45E5.1) mRNA, complete cds. 11/11 None
SNAP00000012954 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5744395:5746805:1 11/11 None
GENEFINDER00000012960 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5740934:5746805:1 11/11 None
C45E5.1 ENSEMBL cdna:known chromosome:CEL140:IV:5744388:5747081:1 gene:C45E5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5744400-5746811(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C45E5.1
Entrez Gene 183469 Entrez gene
SwissProt Q18645 EMBL-EBI
WormBase CE34756 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC24288 Hypothetical protein C45E5.2 [Caenorhabditis elegans] ref|NP_500856.1| C45E5.2 [Caenorhabditis elegans] 0.0
blast AAC24287 Hypothetical protein C45E5.1 [Caenorhabditis elegans] ref|NP_500857.2| C45E5.1 [Caenorhabditis elegans] 1.0E-177
blast CAE72659 Hypothetical protein CBG19872 [Caenorhabditis briggsae] 1.0E-122
blast CAE72659 Hypothetical protein CBG19872 [Caenorhabditis briggsae] 1.0E-121
blast AAC24287 Hypothetical protein C45E5.1 [Caenorhabditis elegans] ref|NP_500857.2| C45E5.1 [Caenorhabditis elegans] 1.0E-105
blast AAK84537 Hypothetical protein K02D10.1a [Caenorhabditis elegans] 1.0E-96
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.5E-15
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.8E-12
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 3.5E-15
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 3.7E-96
Pfam IPR001223 EMBL-EBI Glycoside hydrolase, family 18 6.7E-21
Sequence
Target Sequence 
>C. ELEGANS:183122_AT
ggaactggacccgatcataaggataattatacagatggagattttattaatgaagttgat
gttaaatcgaaaattccaaaagcagttgttgtgagcttcgattcacatttcagctatcct
aaactgatgaaagccgccaattttcttgcggatccattagtcgagttcctcgtttgcaat
gaagattcaacattcccgggacctgtaccaggaatgattcttcctgaaactggaccctgg
tcggctgctattcaaaatgtttctggtcgaaaaccggatattgtattcggaaaaccacac
gaacaattggcaaactttttgaaatcgagagttcaggcaggaaaattcaattccgagcgc
actgtcatgtttggagatcgattggatacggatatgatgttcgggaaaaataatgggttc
acaactgtttggatgcaaaccggagtcaacactctattggacattgaactcgctcgtaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACTGGACCCGATCATAAGGATA 670 529 478 Antisense
AAGCCGCCAATTTTCTTGCGGATCC 678 149 608 Antisense
GCGGATCCATTAGTCGAGTTCCTCG 506 291 625 Antisense
TCGAGTTCCTCGTTTGCAATGAAGA 256 603 638 Antisense
CATTCCCGGGACCTGTACCAGGAAT 114 211 668 Antisense
ATTCTTCCTGAAACTGGACCCTGGT 517 11 694 Antisense
CCCTGGTCGGCTGCTATTCAAAATG 60 261 712 Antisense
AATTCAATTCCGAGCGCACTGTCAT 181 175 821 Antisense
GAGCGCACTGTCATGTTTGGAGATC 618 385 832 Antisense
TGGATGCAAACCGGAGTCAACACTC 187 549 907 Antisense
ATTGGACATTGAACTCGCTCGTAAA 690 3 933 Antisense
Sequence Source Affymetrix Proprietary Database