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[183121_at] 7TM chemoreceptor, srx family

Description R03H4.3 /REP_DB=WormBase Gene ID /WP=CE12506 /TR=Q21684 /GB=AAC48108.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 09      6grp_total_sub > Hat      6grp_cgc > 55      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 9.4
(-3)
A 		38.8
(-1.9)
A 		40.9
(-1.8)
A 		173.2
(3)
A 		164
B 67.5
(-1.3)
A 		44
(-3)
A 		78.7
(-0.5)
A 		128.3
(3)
P 		84
C 16.1
(-3)
A 		52.9
(-1.9)
A 		27.4
(-2.7)
A 		216.4
(3)
P 		200
avr 31
(-3) 		45.2
(-2.4) 		49
(-2.2) 		172.6
(3) 		142

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 19.2
(-3)
A 		45
(0.7)
A 		58.1
(2.5)
A 		27.1
(-1.9)
A 		61.6
(3)
A 		59.3
(2.7)
A 		42
B 32.7
(-1.8)
A 		72.6
(3)
P 		23
(-3)
A 		35.9
(-1.4)
A 		59.9
(1.5)
A 		39.4
(-1)
A 		50
C 18.4
(-2.9)
A 		74.1
(3)
A 		61.1
(1.6)
A 		48.7
(0.3)
A 		17.5
(-3)
A 		71.1
(2.7)
A 		57
avr 23.4
(-3) 		63.9
(3) 		47.4
(0.6) 		37.2
(-1) 		46.3
(0.4) 		56.6
(1.9) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 3.4
(-3)
A 		8.4
(-1.6)
A 		10.7
(-1)
A 		25.4
(3)
A 		22
B 21.5
(0.9)
A 		10.9
(-3)
A 		18.2
(-0.3)
A 		27.3
(3)
P 		16
C 5.3
(-3)
A 		15.2
(-1.1)
A 		9.6
(-2.2)
A 		36.5
(3)
P 		31
avr 10.1
(-3) 		11.5
(-2.6) 		12.8
(-2.2) 		29.7
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 3.5
(-3)
A 		16
(2)
A 		12.7
(0.7)
A 		6.9
(-1.6)
A 		18.6
(3)
A 		14.4
(1.3)
A 		15
B 11.4
(-1.1)
A 		24.1
(2.9)
P 		5.6
(-3)
A 		9.5
(-1.7)
A 		24.3
(3)
A 		14.7
(-0.1)
A 		19
C 6.8
(-2.6)
A 		22.6
(2.6)
A 		15.5
(0.2)
A 		9.8
(-1.6)
A 		5.7
(-3)
A 		23.8
(3)
A 		18
avr 7.2
(-3) 		20.9
(3) 		11.3
(-1.2) 		8.7
(-2.3) 		16.2
(0.9) 		17.6
(1.6) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183121_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12335
Sequence Type Exemplar sequence
Representative Public ID R03H4.3 NCBI
Target Description R03H4.3 /REP_DB=WormBase Gene ID /WP=CE12506 /TR=Q21684 /GB=AAC48108.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072928(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072928 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-3) (srx-3) mRNA, complete cds. 11/11 None
R03H4.3 ENSEMBL cdna:known chromosome:CEL140:V:9008129:9009517:1 gene:R03H4.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000020049 6/11 Cross Hyb Matching Probes None
GENEFINDER00000020057 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9008129-9009518(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-3
Ensembl R03H4.3
Entrez Gene 187549 Entrez gene
SwissProt Q21684 EMBL-EBI
WormBase CE36394 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_505329 Serpentine Receptor, class X family member (srx-3) [Caenorhabditis elegans] gb|AAC48108.2| Serpentine receptor, class x protein 3 [Caenorhabditis elegans] 0.0
blast NP_503296 Serpentine Receptor, class X family member (srx-4) [Caenorhabditis elegans] gb|AAK72316.1| Serpentine receptor, class x protein 4 [Caenorhabditis elegans] 2.0E-96
blast AAG24152 Serpentine receptor, class x protein 1 [Caenorhabditis elegans] ref|NP_505328.2| Serpentine Receptor, class X family member (srx-1) [Caenorhabditis elegans] 7.0E-61
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505329.2 6 13-35,55-77,84-106,121-143,227-249,259-281
R03H4.3 6 13-35,55-77,84-106,121-143,227-249,259-281
Sequence
Target Sequence 
>C. ELEGANS:183121_AT
actgatcgcagtgtttcgtttggcttttattgttcgaaaaaatcatgtttatatcattac
attctttaatattttgtcaaatgttattcaaatggcattggcaacattttatctggcgcc
gaccataatcacaagttccttcctcgtcagtaccgaaaagaagagcaagtggacattagt
tttcggctccgcttttttgtttttctggtatttcgaaacatttactcaaattgtgatggc
actcaatagatacgctatacagtttagtctcacattagttttctacattttcgtctgggt
atttctgcgcgtacttcccgtaatgcttgaaaatcgtcatgttgaatggtttatcttggt
tccatttttctacacagttaactgttcttcagcagctatcattaacattggactcaacaa
tgaagttcaaaagaacttacttcccaaaagcatatatcctcttcttcaacattttggcct
tacacggttcgacgctccaacaatcaacgctactctagcatctgtgacaattcaatcaaa
gccgtctgtgttaccagttgctattcggttcattcctacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGATCGCAGTGTTTCGTTTGGCT 297 97 93 Antisense
TATCTGGCGCCGACCATAATCACAA 502 659 202 Antisense
TTCCTTCCTCGTCAGTACCGAAAAG 365 561 228 Antisense
AGTGGACATTAGTTTTCGGCTCCGC 82 59 260 Antisense
TTTCGTCTGGGTATTTCTGCGCGTA 214 671 381 Antisense
ATCTTGGTTCCATTTTTCTACACAG 60 29 445 Antisense
AAAAGCATATATCCTCTTCTTCAAC 565 131 538 Antisense
CAACATTTTGGCCTTACACGGTTCG 138 187 559 Antisense
GCTACTCTAGCATCTGTGACAATTC 202 303 601 Antisense
AAGCCGTCTGTGTTACCAGTTGCTA 589 149 631 Antisense
GTTGCTATTCGGTTCATTCCTACAA 129 439 649 Antisense
Sequence Source Affymetrix Proprietary Database