[Home] | [Total List]

[183120_at]

Description C06G1.1 /REP_DB=WormBase Gene ID /WP=CE27054 /TR=Q17743 /GB=AAK32948.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 90      6grp_highest_nonorm > 72      6grp_total > 82      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 872
1 2 3 4 range
A 33.8
(-3)
A 		750.2
(2.9)
P 		762.5
(3)
P 		62.1
(-2.8)
A 		729
B 37.7
(-3)
A 		753.2
(2.4)
P 		834.8
(3)
P 		60.5
(-2.8)
P 		797
C 16.4
(-3)
A 		678.1
(1.6)
P 		888.7
(3)
P 		79.8
(-2.6)
A 		872
avr 29.3
(-3) 		727.2
(2.2) 		828.7
(3) 		67.5
(-2.7) 		799

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 566
1 2 3 4 5 6 range
A 111.8
(-3)
P 		487
(2.4)
P 		320
(0)
P 		421.7
(1.5)
P 		525.2
(3)
P 		276.6
(-0.6)
P 		413
B 144.6
(-3)
P 		450.5
(1.4)
P 		322.1
(-0.5)
P 		521.7
(2.4)
P 		565.4
(3)
P 		214.3
(-2)
P 		421
C 102.5
(-3)
P 		526.3
(1.5)
P 		372.5
(-0.1)
P 		362.4
(-0.2)
P 		668.5
(3)
P 		242.1
(-1.5)
P 		566
avr 119.6
(-3) 		487.9
(1.7) 		338.2
(-0.2) 		435.3
(1.1) 		586.4
(3) 		244.3
(-1.4) 		467
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 304
1 2 3 4 range
A 12.3
(-2.9)
A 		162.8
(1.8)
P 		199.3
(3)
P 		9.1
(-3)
A 		190
B 12
(-3)
A 		186
(2.8)
P 		193.4
(3)
P 		12.9
(-3)
P 		181
C 5.4
(-3)
A 		195
(0.7)
P 		309.7
(3)
P 		13.5
(-2.8)
A 		304
avr 9.9
(-3) 		181.3
(1.6) 		234.1
(3) 		11.8
(-2.9) 		224

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 209
1 2 3 4 5 6 range
A 20.6
(-3)
P 		173.2
(3)
P 		69.7
(-1.1)
P 		106.9
(0.4)
P 		158.5
(2.4)
P 		67.3
(-1.2)
P 		153
B 50.3
(-3)
P 		150
(0.3)
P 		78.2
(-2.1)
P 		138.2
(-0.1)
P 		229.7
(3)
P 		79.9
(-2)
P 		179
C 38
(-3)
P 		160.6
(1.1)
P 		94.8
(-1.1)
P 		72.9
(-1.8)
P 		216.3
(3)
P 		81
(-1.6)
P 		178
avr 36.3
(-3) 		161.3
(1.5) 		80.9
(-1.4) 		106
(-0.5) 		201.5
(3) 		76.1
(-1.6) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183120_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18002
Sequence Type Exemplar sequence
Representative Public ID C06G1.1 NCBI
Target Description C06G1.1 /REP_DB=WormBase Gene ID /WP=CE27054 /TR=Q17743 /GB=AAK32948.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078288(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078288 NCBI Caenorhabditis elegans C06G1.1 (C06G1.1) mRNA, complete cds. 11/11 None
GENEFINDER00000018887 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16633281:16637337:1 11/11 None
SNAP00000018879 ENSEMBL cdna:SNAP chromosome:CEL140:X:16634932:16637125:1 11/11 None
C06G1.1 ENSEMBL cdna:known chromosome:CEL140:X:16633276:16637546:1 gene:C06G1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16633258-16637125(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06G1.1
Entrez Gene 181720 Entrez gene
SwissProt Q17743 EMBL-EBI
WormBase CE27054 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8289 lipid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK32948 Hypothetical protein C06G1.1 [Caenorhabditis elegans] ref|NP_510689.1| C06G1.1 [Caenorhabditis elegans] 0.0
blast CAE69954 Hypothetical protein CBG16343 [Caenorhabditis briggsae] 0.0
blast T30079 hypothetical protein C06G1.1 - Caenorhabditis elegans 0.0
blast AAK32948 Hypothetical protein C06G1.1 [Caenorhabditis elegans] ref|NP_510689.1| C06G1.1 [Caenorhabditis elegans] 1.0E-157
Protein Domains
Database ID Description E-Value
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 7.9E-7
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 7.9E-7
Pfam IPR001124 EMBL-EBI Lipid-binding serum glycoprotein 1.8E-6
Sequence
Target Sequence 
>C. ELEGANS:183120_AT
gacaggccacgaataattccgcgttggttgggtatctgaagacagactgtggaaccggag
atatctgcgctggaacgctgttccccgcactcggaactcgattccctggaggagaagtag
tgatcaagtcgcatacagtgtcgtatccacgagtggtgcttagaaagaacaacatgacca
tttacatcgacagtagagtggatgcatttgtacagcaacaagatcgcagccgccgcttcc
ttaccgcctcgatgaacgctgaagtgaaactggataagccatcgttcaaagatttcgttt
tgcacggagaattgcgaattgataagttcaaggtttcagatgttgcatcattagttgatg
gaattgatgagggatccttggagtttttagtgaatgccttaacggaacttattctcaatg
aagatatggccaagaagttaaagagtggaattcaattacccattatgtttgattacactc
aacaagcagctaatgtcagcattgaagatgacatgctgcacatttctgccgatttctgtg
caaccgacaagtgtgcaacgacggcggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAGGCCACGAATAATTCCGCGTT 318 369 638 Antisense
AATTCCGCGTTGGTTGGGTATCTGA 353 177 652 Antisense
GATATCTGCGCTGGAACGCTGTTCC 28 427 697 Antisense
CTCGGAACTCGATTCCCTGGAGGAG 516 229 727 Antisense
GTCGCATACAGTGTCGTATCCACGA 25 475 765 Antisense
TGTACAGCAACAAGATCGCAGCCGC 605 559 846 Antisense
TTACCGCCTCGATGAACGCTGAAGT 70 683 878 Antisense
AATGCCTTAACGGAACTTATTCTCA 488 165 1030 Antisense
GATGACATGCTGCACATTTCTGCCG 482 411 1144 Antisense
TTCTGCCGATTTCTGTGCAACCGAC 342 691 1161 Antisense
GACAAGTGTGCAACGACGGCGGACA 447 365 1183 Antisense
Sequence Source Affymetrix Proprietary Database