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[183119_at] 7TM chemoreceptor, sri family

Description Y22F5A.2 /REP_DB=WormBase Gene ID /WP=CE16603 /TR=O62413 /GB=CAA16321.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 04      6grp_cgc > 63      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 1.7
(-3)
A 		8
(-2.2)
A 		4.8
(-2.6)
A 		46.7
(3)
A 		45
B 27.8
(3)
A 		11.8
(-1.1)
A 		4.2
(-3)
A 		24.5
(2.2)
A 		24
C 24.4
(-1.3)
A 		1.7
(-3)
A 		20.5
(-1.6)
A 		81.8
(3)
P 		80
avr 18
(-1.5) 		7.2
(-3) 		9.8
(-2.6) 		51
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 7.6
(-2.2)
A 		4.6
(-2.6)
A 		16.7
(-0.8)
A 		42.2
(3)
A 		4.2
(-2.7)
A 		2.1
(-3)
A 		40
B 4.7
(-2.7)
A 		28.1
(3)
A 		3.4
(-3)
A 		7.7
(-2)
A 		9.1
(-1.6)
A 		11.8
(-1)
A 		25
C 18.9
(-0.2)
A 		36.5
(3)
A 		3.9
(-3)
A 		4.4
(-2.9)
A 		5.2
(-2.8)
A 		13.2
(-1.3)
A 		33
avr 10.4
(-1.5) 		23.1
(3) 		8
(-2.4) 		18.1
(1.2) 		6.2
(-3) 		9
(-2) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 0.6
(-3)
A 		1.7
(-1.9)
A 		1.3
(-2.3)
A 		6.8
(3)
A 		6
B 8.9
(3)
A 		2.9
(-1.6)
A 		1
(-3)
A 		5.2
(0.2)
A 		8
C 8.1
(0.4)
A 		0.5
(-3)
A 		7.1
(-0)
A 		13.8
(3)
P 		13
avr 5.9
(0.7) 		1.7
(-3) 		3.1
(-1.8) 		8.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.4
(-2.5)
A 		1.6
(-2.4)
A 		3.6
(-1.2)
A 		10.7
(3)
A 		1.3
(-2.5)
A 		0.5
(-3)
A 		10
B 1.6
(-2.4)
A 		9.4
(3)
A 		0.8
(-3)
A 		2
(-2.2)
A 		3.7
(-1)
A 		4.4
(-0.5)
A 		9
C 7
(0.6)
A 		11.1
(3)
A 		1
(-2.9)
A 		0.9
(-3)
A 		1.7
(-2.5)
A 		4.4
(-0.9)
A 		10
avr 3.3
(-1.4) 		7.4
(3) 		1.8
(-3) 		4.5
(-0.1) 		2.2
(-2.6) 		3.1
(-1.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183119_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12374
Sequence Type Exemplar sequence
Representative Public ID Y22F5A.2 NCBI
Target Description Y22F5A.2 /REP_DB=WormBase Gene ID /WP=CE16603 /TR=O62413 /GB=CAA16321.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073239
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073239 NCBI Caenorhabditis elegans Serpentine Receptor, class I family member (sri-18) (sri-18) mRNA, complete cds. None
Y22F5A.2 ENSEMBL cdna:known chromosome:CEL140:V:10261242:10263135:-1 gene:Y22F5A.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10261241-10263135(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sri family
Gene Symbol sri-18
Ensembl Y22F5A.2
Entrez Gene 189519 Entrez gene
SwissProt O62413 EMBL-EBI
WormBase CE33726 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA16321 Hypothetical protein Y22F5A.2 [Caenorhabditis elegans] ref|NP_505640.2| Serpentine Receptor, class I family member (sri-18) [Caenorhabditis elegans] 1.0E-170
blast CAE64777 Hypothetical protein CBG09568 [Caenorhabditis briggsae] 1.0E-108
blast NP_001022422 Serpentine Receptor, class I family member (sri-40) [Caenorhabditis elegans] gb|AAX22282.1| Serpentine receptor, class i protein 40, isoform b [Caenorhabditis elegans] 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.2E-82
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505640.2 7 15-37,49-83,93-115,136-155,197-219,249-271,281-303
Y22F5A.2 7 15-37,49-83,93-115,136-155,197-219,249-271,281-303
Sequence
Target Sequence 
>C. ELEGANS:183119_AT
atgtcttcaaatctattgccagtacttggaactattgcttttgcattttcagagccgaga
attgccatttatgacatagattttcatcgaaatcctgcattcttctttttaacattgagc
attatatttggaaccgtaatactttcaacttcttattatattttatatgctcagttgtac
ataatgctgaaatcaatcaaaacaagaatatctaacagaagttttaaaaaacattcagtt
gcagttataagtacaattatgcagaatttggtattcgcattcttttttctatttcccatt
ttaattctgtcagtcgttattttaactgggaaagatgcttcaggaaattttgaacaaata
tctccagattatattataactaaagttcaaatgaaatctcgcgcctgcttggttttaatt
ggtgttatttcttttcattcttctgcaaatactcttgtgatgtgcctcacttttacttca
tttcggaaagcaattttatcatttttctgtaatttctgtcaacaaaatcaaagtagaact
ataacaatagtaccaccagtcaacaatttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGTCTTCAAATCTATTGCCAGTAC 338 45 430 Antisense
GTACTTGGAACTATTGCTTTTGCAT 351 459 451 Antisense
GCTTTTGCATTTTCAGAGCCGAGAA 240 305 466 Antisense
GAAATCCTGCATTCTTCTTTTTAAC 414 361 518 Antisense
TGGAACCGTAATACTTTCAACTTCT 610 545 558 Antisense
ATTTCCCATTTTAATTCTGTCAGTC 429 17 720 Antisense
AGTTCAAATGAAATCTCGCGCCTGC 159 63 813 Antisense
TCGCGCCTGCTTGGTTTTAATTGGT 249 599 828 Antisense
TTTCTTTTCATTCTTCTGCAAATAC 259 671 857 Antisense
TGATGTGCCTCACTTTTACTTCATT 95 567 887 Antisense
ATAGTACCACCAGTCAACAATTTGA 298 19 976 Antisense
Sequence Source Affymetrix Proprietary Database