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[183118_s_at]

Description C33A11.2 /REP_DB=WormBase Gene ID /WP=CE08547 /TR=Q93319 /GB=CAB01861.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 08      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 105.3
(-3)
P 		113.9
(-2.3)
A 		126.9
(-1.3)
A 		182.6
(3)
P 		77
B 105.4
(-3)
M 		110.9
(-2.8)
A 		179.5
(-0.5)
P 		284.4
(3)
P 		179
C 116.3
(-2.8)
P 		110.6
(-3)
A 		116.9
(-2.8)
P 		318
(3)
P 		207
avr 109
(-3) 		111.8
(-2.9) 		141.1
(-1.7) 		261.7
(3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 105.6
(-0.1)
P 		51.9
(-3)
A 		107.6
(-0)
A 		94.9
(-0.7)
P 		162.1
(2.9)
P 		164.4
(3)
P 		113
B 130.6
(2.1)
P 		95.2
(-0.8)
M 		67.2
(-3)
A 		101.8
(-0.2)
A 		141.9
(3)
P 		132.5
(2.2)
P 		75
C 88.5
(-1.2)
M 		70.2
(-2.2)
A 		55.7
(-3)
A 		80.1
(-1.7)
P 		167.4
(3)
P 		118.4
(0.4)
P 		112
avr 108.2
(-0.5) 		72.4
(-3) 		76.8
(-2.7) 		92.3
(-1.6) 		157.1
(3) 		138.4
(1.7) 		85
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 38.3
(3)
P 		24.7
(-3)
A 		33.2
(0.8)
A 		26.7
(-2.1)
P 		14
B 33.6
(-1.9)
M 		27.4
(-3)
A 		41.6
(-0.4)
P 		60.6
(3)
P 		33
C 38.5
(-1.2)
P 		31.8
(-3)
A 		40.8
(-0.5)
P 		53.6
(3)
P 		22
avr 36.8
(-0.2) 		28
(-3) 		38.5
(0.3) 		47
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 19.5
(-2.8)
P 		18.5
(-3)
A 		23.4
(-2)
A 		24.1
(-1.9)
P 		48.9
(3)
P 		40
(1.2)
P 		30
B 45.4
(1.2)
P 		31.7
(-0.8)
M 		16.3
(-3)
A 		27
(-1.4)
A 		57.7
(3)
P 		49.4
(1.8)
P 		41
C 32.8
(-0.2)
M 		21.4
(-1.9)
A 		14.2
(-3)
A 		16.1
(-2.7)
P 		54.2
(3)
P 		39.6
(0.8)
P 		40
avr 32.6
(-0.5) 		23.9
(-2) 		18
(-3) 		22.4
(-2.3) 		53.6
(3) 		43
(1.2) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183118_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18000
Sequence Type Exemplar sequence
Representative Public ID C33A11.2 NCBI
Target Description C33A11.2 /REP_DB=WormBase Gene ID /WP=CE08547 /TR=Q93319 /GB=CAB01861.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078140(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078140 NCBI Caenorhabditis elegans C33A11.2 (C33A11.2) mRNA, complete cds. 11/11 None
GENEFINDER00000038758 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15365914:15369673:1 11/11 None
C33A11.2 ENSEMBL cdna:known chromosome:CEL140:X:15365911:15369915:1 gene:C33A11.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038753 6/11 Cross Hyb Matching Probes None
SNAP00000038754 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15365913-15369673(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C33A11.2
Entrez Gene 181626 Entrez gene
SwissProt Q93319 EMBL-EBI
WormBase CE08547 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1600032_AT similar to CG4025-PA cfa
CANINE_2:CFA.9350.1.S1_AT similar to CG4025-PA cfa
CANINE_2:CFAAFFX.30237.1.S1_AT similar to CG4025-PA cfa
CANINE_2:CFAAFFX.30237.1.S1_S_AT similar to CG4025-PA cfa
CANINE_2:CFAAFFX.30238.1.S1_S_AT similar to CG4025-PA cfa
DROSOPHILA_2:1634300_AT dm
DROSGENOME1:144074_AT dm
CHICKEN:GGA.6258.1.S1_A_AT similar to RIKEN cDNA 2610318G18 gga
HU35KSUBB:RC_T10196_AT transmembrane protein 77 hs
HU35KSUBC:RC_H57959_AT transmembrane protein 77 hs
HU35KSUBC:RC_AA459282_AT transmembrane protein 77 hs
U133_X3P:HS.125031.1.A2_3P_AT transmembrane protein 77 hs
U133_X3P:HS.125031.1.A1_3P_AT transmembrane protein 77 hs
HG-U133_PLUS_2:225228_AT transmembrane protein 77 hs
HG-U133B:225228_AT transmembrane protein 77 hs
HG-U133_PLUS_2:225230_AT transmembrane protein 77 hs
HG-U133B:225230_AT transmembrane protein 77 hs
HG-U95B:45780_AT transmembrane protein 77 hs
HG-U95B:46424_AT transmembrane protein 77 hs
HG-U95C:58928_AT transmembrane protein 77 hs
HG-U95D:72478_AT Transmembrane protein 77 hs
MOUSE430A_2:1453731_A_AT transmembrane protein 77 mm
MOE430A:1453731_A_AT transmembrane protein 77 mm
MOUSE430_2:1453731_A_AT transmembrane protein 77 mm
MU11KSUBA:AA290487_S_AT transmembrane protein 77 mm
MG-U74AV2:96688_AT transmembrane protein 77 mm
MG-U74AV2:161540_R_AT transmembrane protein 77 mm
MOE430A:1424782_AT transmembrane protein 77 mm
MOUSE430A_2:1424782_AT transmembrane protein 77 mm
MOUSE430_2:1424782_AT transmembrane protein 77 mm
MOUSE430_2:1445545_AT RIKEN cDNA 2610318G18 gene (2610318G18Rik), transcript variant 2, mRNA mm
MOE430B:1445545_AT RIKEN cDNA 2610318G18 gene (2610318G18Rik), transcript variant 2, mRNA mm
MU19KSUBC:TC40280_AT RIKEN cDNA 2610318G18 gene (2610318G18Rik), transcript variant 2, mRNA mm
RG-U34C:RC_AA818113_AT hypothetical protein LOC362011 rn
RAE230A:1374518_AT hypothetical protein LOC362011 rn
RAT230_2:1374518_AT hypothetical protein LOC362011 rn
RAE230B:1382371_AT hypothetical protein LOC362011 rn
RAT230_2:1382371_AT hypothetical protein LOC362011 rn
Protein Similarities
Method ID Description E-Value
blast CAB01861 Hypothetical protein C33A11.2 [Caenorhabditis elegans] ref|NP_510541.1| C33A11.2 [Caenorhabditis elegans] 1.0E-149
blast CAE63302 Hypothetical protein CBG07689 [Caenorhabditis briggsae] 7.0E-80
blast CAE63303 Hypothetical protein CBG07690 [Caenorhabditis briggsae] 4.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510541.1 5 12-34,54-76,102-124,129-146,159-181
C33A11.2 5 12-34,54-76,102-124,129-146,159-181
GENEFINDER00000038758 5 12-34,54-76,102-124,129-146,159-181
Sequence
Target Sequence 
>C. ELEGANS:183118_S_AT
gttgaggggcattttcgcattctatgatgaggccaacctgcaggcatggaactggcggca
aaagtggtttggatacattgccgcgctgggattgttctttgtggcaaatgttcaggaaac
cgccatcatcccggttcacatgtcctccgccgttgcctcatttggtggattcagcatcta
catgatcttccagtgctaccttacgcaccgagtcacaccgacaatcacactgaggactgt
tttctattaccgtgtgatcttcactatcttctccgtgatttgcttctgctgctcatttgg
attcggaatcgctgcttccaaaatcttccacaagacgtacccggatcttccgacgccccg
tccctggtcccgtcgtatttatcagcccggctacgagctgcaccagatctcggcgctcgc
tgaatggggatgtgccatctcacagatcttcttcatacagtcgtttgggccggagtttga
ggacatctccctcgactattatctcaaatcgcactacgttccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGAGGGGCATTTTCGCATTCTAT 387 437 249 Antisense
AGTGGTTTGGATACATTGCCGCGCT 515 59 311 Antisense
CCGTTGCCTCATTTGGTGGATTCAG 634 263 398 Antisense
ATCTACATGATCTTCCAGTGCTACC 314 31 424 Antisense
GAGGACTGTTTTCTATTACCGTGTG 72 403 480 Antisense
ATCTTCCACAAGACGTACCCGGATC 467 27 571 Antisense
ATCTCGGCGCTCGCTGAATGGGGAT 402 31 655 Antisense
GGATGTGCCATCTCACAGATCTTCT 70 515 676 Antisense
GATCTTCTTCATACAGTCGTTTGGG 247 419 693 Antisense
ATCTCCCTCGACTATTATCTCAAAT 548 33 733 Antisense
TATCTCAAATCGCACTACGTTCCGC 111 659 748 Antisense
Sequence Source Affymetrix Proprietary Database