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[183117_at]

Description ZK742.3 /REP_DB=WormBase Gene ID /WP=CE07639 /TR=Q23090 /GB=AAB04982.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 60      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 165.8
(2.9)
P 		169.5
(3)
P 		160.5
(2.6)
P 		20.8
(-3)
A 		149
B 171.9
(1.9)
P 		168
(1.7)
P 		193.4
(3)
P 		74.3
(-3)
A 		119
C 186.9
(2.2)
P 		183.3
(2)
A 		204.4
(3)
P 		77.5
(-3)
A 		127
avr 174.9
(2.5) 		173.6
(2.4) 		186.1
(3) 		57.5
(-3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 139.2
(2.4)
A 		139.4
(2.4)
P 		151.1
(3)
P 		92.2
(-0.1)
A 		38.2
(-3)
A 		51.7
(-2.3)
A 		113
B 141.7
(1.4)
P 		187
(3)
P 		179.5
(2.7)
P 		64.2
(-1.3)
A 		13.8
(-3)
A 		95.9
(-0.2)
A 		173
C 180.2
(3)
P 		167.5
(2.6)
P 		111.7
(0.6)
A 		102.9
(0.3)
A 		7.5
(-3)
A 		67.1
(-0.9)
A 		173
avr 153.7
(2.5) 		164.6
(3) 		147.4
(2.3) 		86.4
(-0.2) 		19.8
(-3) 		71.6
(-0.9) 		145
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 60.4
(3)
P 		36.8
(0.5)
P 		42
(1.1)
P 		3
(-3)
A 		57
B 54.8
(3)
P 		41.5
(1)
P 		44.8
(1.5)
P 		15.8
(-3)
A 		39
C 61.9
(2)
P 		52.7
(1.1)
A 		71.2
(3)
P 		13.1
(-3)
A 		58
avr 59
(3) 		43.7
(1.1) 		52.7
(2.2) 		10.6
(-3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 25.7
(-0.8)
A 		49.6
(3)
P 		32.9
(0.4)
P 		23.4
(-1.1)
A 		11.5
(-3)
A 		12.6
(-2.8)
A 		38
B 49.3
(1.6)
P 		62.2
(3)
P 		43.6
(1)
P 		17
(-1.8)
A 		5.6
(-3)
A 		35.8
(0.2)
A 		57
C 66.8
(3)
P 		51.1
(1.5)
P 		28.4
(-0.6)
A 		20.7
(-1.3)
A 		2.4
(-3)
A 		22.5
(-1.1)
A 		64
avr 47.3
(2.1) 		54.3
(3) 		35
(0.6) 		20.4
(-1.3) 		6.5
(-3) 		23.6
(-0.9) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183117_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12322
Sequence Type Exemplar sequence
Representative Public ID ZK742.3 NCBI
Target Description ZK742.3 /REP_DB=WormBase Gene ID /WP=CE07639 /TR=Q23090 /GB=AAB04982.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072613 NCBI Caenorhabditis elegans ZK742.3 (ZK742.3) mRNA, complete cds. 11/11 None
SNAP00000028064 ENSEMBL cdna:SNAP chromosome:CEL140:V:7811011:7812501:-1 11/11 None
GENEFINDER00000028071 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7811011:7812501:-1 11/11 None
ZK742.3 ENSEMBL cdna:known chromosome:CEL140:V:7810992:7812501:-1 gene:ZK742.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7811011-7812502(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK742.3
Entrez Gene 191419 Entrez gene
SwissProt Q23090 EMBL-EBI
WormBase CE07639 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04982 Hypothetical protein ZK742.3 [Caenorhabditis elegans] ref|NP_505014.1| ZK742.3 [Caenorhabditis elegans] 0.0
blast CAE73180 Hypothetical protein CBG20578 [Caenorhabditis briggsae] 0.0
blast CAE73179 Hypothetical protein CBG20577 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR001155 EMBL-EBI NADH:flavin oxidoreductase/NADH oxidase 8.1E-22
Sequence
Target Sequence 
>C. ELEGANS:183117_AT
gaaagtggcatctctcgtgaggatattatcaaagtttgcgagcttatcgagaattccggt
tttgatttcgtcgaactgacaggaggagcaatggaaagtgttgtgaaggaagttcagaaa
cgacatagtactatcgcgcgggaagactttttcctagattttgtacaattcactagcaaa
atattcaaagaaacggtagtctatataaccggccgctggcaaactgccaacgcaatggtc
acatctgtgaatatgggtttaacgagtggagttggacttggaagatggagctgctcggag
cccgatttcccaagaaaactgatagctggagagattttctcgtgtcctgatctgaagttt
gctccaagtgaatttttaatcgctaagcatgcggctcattttcatataaagcagatgtca
gagcatatgtacgattcacaaaacagcacttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGTGGCATCTCTCGTGAGGATA 495 361 757 Antisense
GAGAATTCCGGTTTTGATTTCGTCG 591 389 805 Antisense
GTACTATCGCGCGGGAAGACTTTTT 475 457 884 Antisense
ATATAACCGGCCGCTGGCAAACTGC 379 9 959 Antisense
GGCAAACTGCCAACGCAATGGTCAC 182 535 974 Antisense
GGAAGATGGAGCTGCTCGGAGCCCG 146 531 1036 Antisense
GGAGCCCGATTTCCCAAGAAAACTG 652 513 1053 Antisense
GGAGAGATTTTCTCGTGTCCTGATC 103 519 1084 Antisense
GTGTCCTGATCTGAAGTTTGCTCCA 280 487 1098 Antisense
TCGCTAAGCATGCGGCTCATTTTCA 296 599 1136 Antisense
GTACGATTCACAAAACAGCACTTCA 447 459 1185 Antisense
Sequence Source Affymetrix Proprietary Database