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[183115_at]

Description C34H4.2 /REP_DB=WormBase Gene ID /WP=CE17510 /TR=O45143 /GB=AAC04391.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 61      6grp_highest_nonorm > 71      6grp_total > 61      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1395
1 2 3 4 range
A 245.4
(-2)
P 		884.8
(0.8)
P 		1372.7
(3)
P 		14.8
(-3)
A 		1358
B 167.4
(-2.3)
P 		999.9
(1.3)
P 		1402.8
(3)
P 		7.8
(-3)
A 		1395
C 214.5
(-2.2)
P 		952.1
(1.4)
P 		1272.4
(3)
P 		42.2
(-3)
A 		1230
avr 209.1
(-2.2) 		945.6
(1.2) 		1349.3
(3) 		21.6
(-3) 		1328

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 158.9
(-2.5)
P 		316.6
(0.5)
P 		437.5
(2.7)
P 		452.4
(3)
P 		242.5
(-0.9)
P 		131.6
(-3)
P 		321
B 175.5
(-2.2)
P 		261.1
(-0.8)
P 		372.5
(1.1)
P 		486.7
(3)
P 		218
(-1.5)
P 		129
(-3)
P 		358
C 178.7
(-2.1)
P 		316.7
(-0)
P 		516.6
(3)
P 		464.9
(2.2)
P 		287.8
(-0.5)
P 		119.4
(-3)
P 		397
avr 171
(-2.2) 		298.1
(0) 		442.2
(2.5) 		468
(3) 		249.4
(-0.8) 		126.7
(-3) 		341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 442
1 2 3 4 range
A 89.3
(-1.5)
P 		192.1
(0.2)
P 		358.9
(3)
P 		2.2
(-3)
A 		357
B 53.4
(-2)
P 		247
(1.6)
P 		325.1
(3)
P 		1.7
(-3)
A 		323
C 71
(-2.1)
P 		273.7
(0.7)
P 		443.5
(3)
P 		7.1
(-3)
A 		436
avr 71.2
(-1.9) 		237.6
(0.8) 		375.8
(3) 		3.7
(-3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 29.3
(-3)
P 		112.6
(2.9)
P 		95.3
(1.6)
P 		114.7
(3)
P 		73.2
(0.1)
P 		32
(-2.8)
P 		85
B 61.1
(-2)
P 		86.9
(-0.1)
P 		90.5
(0.1)
P 		128.9
(3)
P 		88.6
(0)
P 		48.1
(-3)
P 		81
C 66.2
(-1.3)
P 		96.6
(0.7)
P 		131.5
(3)
P 		93.5
(0.5)
P 		93.1
(0.5)
P 		40
(-3)
P 		92
avr 52.2
(-2) 		98.7
(1.9) 		105.8
(2.5) 		112.4
(3) 		85
(0.7) 		40
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183115_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11121
Sequence Type Exemplar sequence
Representative Public ID C34H4.2 NCBI
Target Description C34H4.2 /REP_DB=WormBase Gene ID /WP=CE17510 /TR=O45143 /GB=AAC04391.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067695(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067695 NCBI Caenorhabditis elegans C34H4.2 (C34H4.2) mRNA, complete cds. 11/11 None
SNAP00000036197 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1553823:1555465:1 11/11 None
GENEFINDER00000036202 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1553823:1555465:1 11/11 None
C34H4.2 ENSEMBL cdna:known chromosome:CEL140:IV:1553788:1555562:1 gene:C34H4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1553828-1555471(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C34H4.2
Entrez Gene 183220 Entrez gene
SwissProt O45143 EMBL-EBI
WormBase CE31328 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04391 Hypothetical protein C34H4.2 [Caenorhabditis elegans] ref|NP_500096.2| C34H4.2 [Caenorhabditis elegans] 0.0
blast CAE67960 Hypothetical protein CBG13564 [Caenorhabditis briggsae] 4.0E-74
blast CAE67960 Hypothetical protein CBG13564 [Caenorhabditis briggsae] 5.0E-70
blast CAE64220 Hypothetical protein CBG08853 [Caenorhabditis briggsae] 4.0E-49
Protein Domains
Database ID Description E-Value
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Pfam IPR005071 EMBL-EBI Protein of unknown function DUF274 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183115_AT
gcaacttcctgtaccaagagcatcaggtgaactttctaccagatccaactcgttcgagaa
ccgtcggtacttttatcactgcatacattccacaaggggccaatgttaacttcacatttg
ttgccgcggacgggagctgggttcagactttcgacagctctaagaacaactctcaactgg
cttcttcctcgcctttagctgcacaaaaactgaatgtcaagtccagtcgaatttttgcag
gcaccttttattgccaatatttcgggatcagtactgcaatgctacctattagctcttcat
ctaccactgtaacgagccctgcaataataaccacaagccaaggaggaaaagcctccacta
ctccgtcctcagctcctccagctccgggaagttcgtcagcaagtcctacaggcaccagtg
gctccagcgtctctcctccagcttctgggccaaccacttctatgccagctcaagcttcaa
ccacacccagtggaacaatgggaagtactctccaaacaactaccaaattctccagatctc
cttcgattcttattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACTTCCTGTACCAAGAGCATCA 622 319 773 Antisense
GTGAACTTTCTACCAGATCCAACTC 626 481 799 Antisense
AGAACCGTCGGTACTTTTATCACTG 138 73 829 Antisense
TTAACTTCACATTTGTTGCCGCGGA 394 683 878 Antisense
GGTTCAGACTTTCGACAGCTCTAAG 284 505 912 Antisense
AGAACAACTCTCAACTGGCTTCTTC 384 73 935 Antisense
GTCCAGTCGAATTTTTGCAGGCACC 124 477 993 Antisense
GCTACCTATTAGCTCTTCATCTACC 177 303 1053 Antisense
TTCATCTACCACTGTAACGAGCCCT 591 687 1068 Antisense
TCAGCAAGTCCTACAGGCACCAGTG 48 625 1168 Antisense
TCCAGATCTCCTTCGATTCTTATTT 177 591 1303 Antisense
Sequence Source Affymetrix Proprietary Database