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[183114_at]

Description W05H7.1 /REP_DB=WormBase Gene ID /WP=CE28507 /TR=O02176 /GB=AAB52863.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 62.3
(-3)
A 		110.3
(0.8)
A 		67.3
(-2.6)
A 		138.2
(3)
P 		76
B 50.9
(-2.5)
A 		67
(-0.9)
A 		45.5
(-3)
A 		106.3
(3)
M 		61
C 22.9
(-3)
A 		29.2
(-2.4)
A 		87.1
(3)
A 		83.4
(2.7)
A 		64
avr 45.4
(-3) 		68.8
(-0.8) 		66.6
(-1) 		109.3
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 15.9
(-2.6)
A 		45
(-0)
A 		79.4
(3)
A 		11.6
(-3)
A 		42.8
(-0.2)
A 		17.3
(-2.5)
A 		68
B 43.4
(3)
A 		30.8
(0.8)
A 		8.8
(-3)
A 		16.2
(-1.7)
A 		21.5
(-0.8)
A 		40.4
(2.5)
A 		35
C 48.1
(0.4)
A 		77.2
(3)
A 		51.3
(0.6)
A 		19.8
(-2.2)
A 		46.9
(0.2)
A 		11.3
(-3)
A 		66
avr 35.8
(0.4) 		51
(3) 		46.5
(2.2) 		15.9
(-3) 		37.1
(0.6) 		23
(-1.8) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 22.7
(1.9)
A 		23.9
(3)
A 		17.6
(-3)
A 		20.2
(-0.5)
P 		6
B 16.2
(-0.2)
A 		16.5
(-0)
A 		10.5
(-3)
A 		22.6
(3)
M 		12
C 7.6
(-3)
A 		8.4
(-2.8)
A 		30.4
(3)
A 		14.1
(-1.3)
A 		23
avr 15.5
(-3) 		16.3
(-1.8) 		19.5
(3) 		19
(2.3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 2.9
(-3)
A 		16
(2.5)
A 		17.3
(3)
A 		3
(-3)
A 		12.9
(1.2)
A 		4.2
(-2.5)
A 		14
B 15.1
(3)
A 		10.3
(0.8)
A 		2.1
(-3)
A 		4.3
(-2)
A 		8.7
(0)
A 		15.1
(3)
A 		13
C 17.8
(1.2)
A 		23.6
(3)
A 		13.1
(-0.2)
A 		4
(-2.9)
A 		15.2
(0.5)
A 		3.8
(-3)
A 		20
avr 11.9
(0.8) 		16.6
(3) 		10.8
(0.3) 		3.8
(-3) 		12.3
(1) 		7.7
(-1.2) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183114_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18292
Sequence Type Exemplar sequence
Representative Public ID W05H7.1 NCBI
Target Description W05H7.1 /REP_DB=WormBase Gene ID /WP=CE28507 /TR=O02176 /GB=AAB52863.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075874(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075874 NCBI Caenorhabditis elegans W05H7.1 (W05H7.1) mRNA, complete cds. 10/11 None
GENEFINDER00000043344 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1450779:1452034:1 10/11 None
W05H7.1 ENSEMBL cdna:known chromosome:CEL140:X:1450763:1452235:1 gene:W05H7.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000043341 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1450778-1451572(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W05H7.1
Entrez Gene 180482 Entrez gene
SwissProt O02176 EMBL-EBI
WormBase CE28507 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508275 W05H7.1 [Caenorhabditis elegans] gb|AAB52863.2| Hypothetical protein W05H7.1 [Caenorhabditis elegans] 1.0E-43
Sequence
Target Sequence 
>C. ELEGANS:183114_AT
tgccgccaggaggatcatccgatagattttgcggagccgatttttttgatgagtacgaaa
aaaaaaatccagttgaaacaattgccaattggcaaaattttgccctgctccctttccccg
gaagaaatccagcgacgccgtgcccaacaagactccctccggcttttccaggacacgttg
gagcaggtccgccagctcgcagagcaactccaggagcagttccgacaggcgacggagcaa
accgcacggatccgagaggagcagaaaaagatccgacgagctatccgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCCGCCAGGAGGATCATCCGATAG 484 585 14 Antisense
AGATTTTGCGGAGCCGATTTTTTTG 217 61 37 Antisense
TTGGCAAAATTTTGCCCTGCTCCCT 153 705 102 Antisense
TCCCCGGAAGAAATCCAGCGACGCC 470 595 128 Antisense
TCCGGCTTTTCCAGGACACGTTGGA 68 587 171 Antisense
CAGGACACGTTGGAGCAGGTCCGCC 682 207 182 Antisense
CCAGCTCGCAGAGCAACTCCAGGAG 173 273 205 Antisense
CAACTCCAGGAGCAGTTCCGACAGG 533 185 218 Antisense
CGACAGGCGACGGAGCAAACCGCAC 586 251 236 Antisense
CAAACCGCACGGATCCGAGAGGAGC 187 191 251 Antisense
AAAAGATCCGACGAGCTATCCGAAG 180 133 279 Antisense
Sequence Source Affymetrix Proprietary Database