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[183113_at]

Description F08F3.8 /REP_DB=WormBase Gene ID /WP=CE09263 /TR=Q22948 /GB=AAB04875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 34.4
(0.4)
A 		52.4
(3)
A 		42.3
(1.6)
A 		10.3
(-3)
A 		42
B 60.5
(2.4)
A 		11
(-3)
A 		59.2
(2.2)
A 		66.2
(3)
A 		55
C 33.4
(-3)
A 		44.3
(-2.2)
A 		37.5
(-2.7)
A 		111.8
(3)
A 		78
avr 42.8
(-1.5) 		35.9
(-3) 		46.3
(-0.7) 		62.8
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 59.3
(-0)
A 		31.4
(-3)
A 		48
(-1.2)
A 		55.5
(-0.4)
P 		60.4
(0.1)
A 		87.8
(3)
P 		56
B 45
(-1.1)
A 		54.3
(-0.2)
A 		26.8
(-3)
A 		67.3
(1.1)
A 		85.5
(3)
P 		81.2
(2.6)
P 		59
C 64.9
(-0.5)
A 		91.4
(2.5)
P 		42.9
(-3)
A 		57.3
(-1.4)
A 		73.2
(0.4)
A 		95.8
(3)
P 		53
avr 56.4
(-0.9) 		59
(-0.6) 		39.2
(-3) 		60
(-0.5) 		73
(1.1) 		88.3
(3) 		49
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 12.5
(3)
A 		11.4
(2.4)
A 		11.1
(2.2)
A 		1.5
(-3)
A 		11
B 19.3
(3)
A 		2.7
(-3)
A 		13.7
(1)
A 		14.1
(1.1)
A 		17
C 11
(-3)
A 		12.7
(-1.7)
A 		13.1
(-1.4)
A 		18.8
(3)
A 		8
avr 14.3
(3) 		8.9
(-3) 		12.6
(1.1) 		11.5
(-0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.9
(-2.8)
A 		11.2
(-2.6)
A 		10.5
(-3)
A 		14.1
(-1)
P 		18.2
(1.2)
A 		21.4
(3)
P 		11
B 15.7
(-1)
A 		18.1
(-0.5)
A 		6.5
(-3)
A 		17.8
(-0.6)
A 		34.7
(3)
P 		30.3
(2.1)
P 		28
C 24.1
(0.7)
A 		27.9
(1.8)
P 		10.9
(-3)
A 		11.5
(-2.8)
A 		23.7
(0.6)
A 		32.1
(3)
P 		21
avr 16.9
(-0.5) 		19.1
(0.2) 		9.3
(-3) 		14.5
(-1.3) 		25.5
(2.2) 		27.9
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183113_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12054
Sequence Type Exemplar sequence
Representative Public ID F08F3.8 NCBI
Target Description F08F3.8 /REP_DB=WormBase Gene ID /WP=CE09263 /TR=Q22948 /GB=AAB04875.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072036 NCBI Caenorhabditis elegans F08F3.8 (F08F3.8) mRNA, complete cds. 11/11 None
SNAP00000026684 ENSEMBL cdna:SNAP chromosome:CEL140:V:5431266:5432369:-1 11/11 None
GENEFINDER00000026695 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5430339:5432369:-1 11/11 None
F08F3.8 ENSEMBL cdna:known chromosome:CEL140:V:5431128:5432369:-1 gene:F08F3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5431127-5432369(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F08F3.8
Entrez Gene 184197 Entrez gene
SwissProt Q22948 EMBL-EBI
WormBase CE09263 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB04875 Hypothetical protein F08F3.8 [Caenorhabditis elegans] ref|NP_504437.1| F08F3.8 [Caenorhabditis elegans] 1.0E-173
blast AAB04875 Hypothetical protein F08F3.8 [Caenorhabditis elegans] ref|NP_504437.1| F08F3.8 [Caenorhabditis elegans] 1.0E-136
blast AAB04875 Hypothetical protein F08F3.8 [Caenorhabditis elegans] ref|NP_504437.1| F08F3.8 [Caenorhabditis elegans] 1.0E-115
blast AAB54273 Hypothetical protein R155.3 [Caenorhabditis elegans] ref|NP_497485.1| R155.3 [Caenorhabditis elegans] 6.0E-26
blast AAB54273 Hypothetical protein R155.3 [Caenorhabditis elegans] ref|NP_497485.1| R155.3 [Caenorhabditis elegans] 7.0E-26
blast AAB54273 Hypothetical protein R155.3 [Caenorhabditis elegans] ref|NP_497485.1| R155.3 [Caenorhabditis elegans] 8.0E-26
blast AAK21449 Hypothetical protein R06B10.2 [Caenorhabditis elegans] ref|NP_497309.1| R06B10.2 [Caenorhabditis elegans] 3.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504437.1 1 260-282
F08F3.8 1 260-282
SNAP00000026684 1 234-256
GENEFINDER00000026695 1 234-256
Sequence
Target Sequence 
>C. ELEGANS:183113_AT
gaacatctccgggactatccgttgctcaactcgatcagattctaacaacaatgcagtcac
ttaaaagcttggatatggacttcacaaagttctccaaggcttttgatggttcaagcaagt
cattgcaatcacttggagcatcctttgtcaactataagaaccacgtgaaaaaggcacaag
catcagttggggctggaggaacaggtggaggaagtggctcaggtccaggatcttctagtt
ccgatcaaaccactatgatcgtgtccatttctgtcggagctgtcgttcttttgattattt
tgggaattgtaattgggatttatctctacctacaccatgtgcacaaattggaacaaccgg
tatcaaaggaagatgataagaagccttgttcgattgctaagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAACATCTCCGGGACTATCCGTTGC 79 351 533 Antisense
TCCGTTGCTCAACTCGATCAGATTC 611 593 550 Antisense
AGTTCTCCAAGGCTTTTGATGGTTC 619 61 620 Antisense
GCAATCACTTGGAGCATCCTTTGTC 193 323 657 Antisense
GGCACAAGCATCAGTTGGGGCTGGA 531 535 705 Antisense
GGCTCAGGTCCAGGATCTTCTAGTT 325 539 748 Antisense
ATCTTCTAGTTCCGATCAAACCACT 554 29 762 Antisense
TGATCGTGTCCATTTCTGTCGGAGC 596 565 788 Antisense
TCGGAGCTGTCGTTCTTTTGATTAT 166 607 806 Antisense
TGGGATTTATCTCTACCTACACCAT 173 551 846 Antisense
GAAGCCTTGTTCGATTGCTAAGAGC 635 343 912 Antisense
Sequence Source Affymetrix Proprietary Database