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[183112_at]

Description C14C6.8 /REP_DB=WormBase Gene ID /WP=CE08163 /TR=O44672 /GB=AAB94266.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 76      4grp_total > 17      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 3.5
(-2.5)
A 		3.1
(-3)
A 		3.5
(-2.5)
A 		7.5
(3)
A 		4
B 2.8
(-3)
A 		13.4
(-0.5)
A 		8.9
(-1.5)
A 		27.9
(3)
A 		25
C 1.1
(-3)
A 		5.3
(-2.2)
A 		9.3
(-1.4)
A 		32.1
(3)
A 		31
avr 2.5
(-3) 		7.3
(-1.6) 		7.2
(-1.6) 		22.5
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.9
(-2.4)
A 		1.7
(-3)
A 		2.3
(-2.7)
A 		2.4
(-2.7)
A 		4.4
(-1.7)
A 		13.8
(3)
A 		12
B 2.9
(-1.6)
A 		6
(1.6)
A 		1.5
(-3)
A 		4.9
(0.5)
A 		2.7
(-1.8)
A 		7.4
(3)
A 		6
C 0.8
(-3)
A 		2.3
(-1.6)
A 		4.1
(0)
A 		7.3
(3)
A 		4.3
(0.2)
A 		2.3
(-1.6)
A 		7
avr 2.2
(-3) 		3.3
(-1.8) 		2.6
(-2.6) 		4.9
(-0.1) 		3.8
(-1.3) 		7.8
(3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.3
(3)
A 		0.7
(-3)
A 		0.9
(-1)
A 		1.1
(1)
A 		1
B 0.9
(-3)
A 		3.3
(-0.1)
A 		2.1
(-1.6)
A 		5.9
(3)
A 		5
C 0.4
(-3)
A 		1.5
(-1.7)
A 		3.2
(0.4)
A 		5.4
(3)
A 		5
avr 0.9
(-3) 		1.8
(-1.3) 		2.1
(-0.8) 		4.1
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.6
(-2.8)
A 		0.5
(-3)
A 		0.6
(-2.8)
A 		1.3
(-1.3)
A 		3.4
(3)
A 		3
B 1
(-1.4)
A 		2
(1.2)
A 		0.4
(-3)
A 		1.3
(-0.7)
A 		1.1
(-1.2)
A 		2.7
(3)
A 		2
C 0.3
(-3)
A 		0.7
(-1)
A 		1
(0.5)
A 		1.5
(3)
A 		1.4
(2.5)
A 		0.8
(-0.5)
A 		1
avr 0.6
(-3) 		1.1
(-1.2) 		0.6
(-3) 		1.1
(-1.2) 		1.3
(-0.5) 		2.3
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183112_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15052
Sequence Type Exemplar sequence
Representative Public ID C14C6.8 NCBI
Target Description C14C6.8 /REP_DB=WormBase Gene ID /WP=CE08163 /TR=O44672 /GB=AAB94266.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070842(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070842 NCBI Caenorhabditis elegans C14C6.8 (C14C6.8) mRNA, complete cds. 11/11 None
SNAP00000017695 ENSEMBL cdna:SNAP chromosome:CEL140:V:548544:552427:-1 11/11 None
GENEFINDER00000017709 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:548544:552996:-1 11/11 None
C14C6.8 ENSEMBL cdna:known chromosome:CEL140:V:551108:552807:-1 gene:C14C6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:551107-552807(-) 99.56 100.0
Public Domain and Genome References
Gene Title
Ensembl C14C6.8
Entrez Gene 182604 Entrez gene
SwissProt O44672 EMBL-EBI
WormBase CE35238 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB94266 Hypothetical protein C14C6.8 [Caenorhabditis elegans] ref|NP_503243.2| C14C6.8 [Caenorhabditis elegans] 0.0
blast CAB05623 Hypothetical protein T15D6.10 [Caenorhabditis elegans] ref|NP_493141.1| T15D6.10 [Caenorhabditis elegans] 0.0
blast AAB70360 Hypothetical protein K06H6.4 [Caenorhabditis elegans] ref|NP_503251.1| K06H6.4 [Caenorhabditis elegans] 0.0
blast AAB94265 Hypothetical protein C14C6.7 [Caenorhabditis elegans] ref|NP_503242.1| C14C6.7 [Caenorhabditis elegans] 0.0
blast AAB69952 Hypothetical protein ZK488.5 [Caenorhabditis elegans] ref|NP_503257.1| ZK488.5 [Caenorhabditis elegans] 0.0
blast AAB69953 Hypothetical protein ZK488.6 [Caenorhabditis elegans] ref|NP_503256.1| ZK488.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 2.4E-121
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Pfam IPR008166 EMBL-EBI Protein of unknown function DUF23 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:183112_AT
accatcgcagcaagtatttctcaaaatggacagctctgatagatattgacgagaggttgg
agattagaaatgagcaatttaagacagtggtggactatttagactcaatccacaatgcgt
cagttgcgaacctacattttcgagtaaaatgggttatgaagcataacaatacacctgcga
gatatgagaatgatgcacagctgacggatgaaatgctcttctgcaaattccgaaacactt
cccggctcggagagctttgggatcaacccaagtgtattattcgtccggaaaatgttgcaa
ttatgactattcatgggccattggcaatgtacaaaggggagacaatcacgcttgttaata
taaatattggctttataagacattatcgaagcgtggagcaaagagttttcccgggagctc
ttgatagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCATCGCAGCAAGTATTTCTCAAA 74 87 524 Antisense
GCGTCAGTTGCGAACCTACATTTTC 87 291 640 Antisense
GCATAACAATACACCTGCGAGATAT 522 307 684 Antisense
GAGAATGATGCACAGCTGACGGATG 308 391 709 Antisense
GAAATGCTCTTCTGCAAATTCCGAA 16 363 733 Antisense
TGCAAATTCCGAAACACTTCCCGGC 461 577 745 Antisense
GGCTCGGAGAGCTTTGGGATCAACC 662 539 767 Antisense
GATCAACCCAAGTGTATTATTCGTC 210 421 784 Antisense
GACTATTCATGGGCCATTGGCAATG 126 373 828 Antisense
AGGGGAGACAATCACGCTTGTTAAT 156 55 858 Antisense
GTTTTCCCGGGAGCTCTTGATAGAA 455 445 928 Antisense
Sequence Source Affymetrix Proprietary Database