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[183111_at]

Description K07D4.8 /REP_DB=WormBase Gene ID /WP=CE25937 /TR=O76576 /GB=AAK71376.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 40      6grp_total > 05      4grp_total > 03      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_rule_based > S1      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5208
1 2 3 4 range
A 1660.1
(-1.7)
P 		713.1
(-2.8)
P 		572
(-3)
P 		5641.1
(3)
P 		5069
B 1149
(-2.3)
P 		731.3
(-2.7)
P 		516.2
(-3)
P 		5606.2
(3)
P 		5090
C 1635.7
(-1.6)
P 		669.3
(-2.7)
P 		433
(-3)
P 		5527.7
(3)
P 		5095
avr 1481.6
(-1.9) 		704.6
(-2.8) 		507.1
(-3) 		5591.7
(3) 		5085

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 859
1 2 3 4 5 6 range
A 1163.7
(3)
P 		797.6
(0.2)
P 		747.9
(-0.2)
P 		607.1
(-1.3)
P 		584.2
(-1.4)
P 		380.5
(-3)
P 		783
B 1224.7
(3)
P 		778.5
(-0.3)
P 		673.7
(-1.1)
P 		719.5
(-0.8)
P 		418.9
(-3)
P 		431
(-2.9)
P 		806
C 1180.5
(3)
P 		856.6
(0.6)
P 		777.2
(0)
P 		571.4
(-1.5)
P 		409
(-2.7)
P 		365.9
(-3)
P 		815
avr 1189.6
(3) 		810.9
(0.1) 		732.9
(-0.4) 		632.7
(-1.2) 		470.7
(-2.4) 		392.5
(-3) 		797
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1075
1 2 3 4 range
A 604.5
(1)
P 		154.8
(-3)
P 		149.5
(-3)
P 		825.8
(3)
P 		676
B 366.4
(-1.6)
P 		180.6
(-2.7)
P 		119.6
(-3)
P 		1194.7
(3)
P 		1075
C 541.5
(0)
P 		192.4
(-2.7)
P 		150.9
(-3)
P 		932.1
(3)
P 		781
avr 504.1
(-0.4) 		175.9
(-2.7) 		140
(-3) 		984.2
(3) 		844

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 345
1 2 3 4 5 6 range
A 214.5
(0.8)
P 		283.7
(3)
P 		162.9
(-0.8)
P 		154
(-1.1)
P 		176.3
(-0.4)
P 		92.6
(-3)
P 		191
B 426.1
(3)
P 		259.1
(-0.8)
P 		163.6
(-2.9)
P 		190.6
(-2.3)
P 		170.2
(-2.8)
P 		160.7
(-3)
P 		265
C 437.6
(3)
P 		261.4
(-0.3)
P 		197.8
(-1.5)
P 		114.9
(-3)
P 		132.3
(-2.7)
P 		122.5
(-2.9)
P 		323
avr 359.4
(3) 		268.1
(0.7) 		174.8
(-1.7) 		153.2
(-2.3) 		159.6
(-2.1) 		125.3
(-3) 		234
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183111_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4213
Sequence Type Exemplar sequence
Representative Public ID K07D4.8 NCBI
Target Description K07D4.8 /REP_DB=WormBase Gene ID /WP=CE25937 /TR=O76576 /GB=AAK71376.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062310(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062310 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-48) (pqn-48) mRNA, complete cds. 11/11 None
SNAP00000021600 ENSEMBL cdna:SNAP chromosome:CEL140:II:4038957:4046790:1 11/11 None
GENEFINDER00000021605 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4033501:4043010:1 9/11 None
K07D4.8 ENSEMBL cdna:known chromosome:CEL140:II:4038865:4043058:1 gene:K07D4.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4038955-4043046(+) 90.73 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pqn-48
Ensembl K07D4.8
Entrez Gene 173743 Entrez gene
SwissProt O76576 EMBL-EBI
WormBase CE25937 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK71376 Prion-like-(q/n-rich)-domain-bearing protein protein 48 [Caenorhabditis elegans] ref|NP_494711.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-48) [Caenorhabditis elegans] 1.0E-150
blast CAE56297 Hypothetical protein CBG23951 [Caenorhabditis briggsae] 1.0E-136
blast AAK71376 Prion-like-(q/n-rich)-domain-bearing protein protein 48 [Caenorhabditis elegans] ref|NP_494711.1| Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-48) [Caenorhabditis elegans] 1.0E-134
blast CAE56297 Hypothetical protein CBG23951 [Caenorhabditis briggsae] 1.0E-130
blast T33343 hypothetical protein K07D4.8 - Caenorhabditis elegans 1.0E-120
blast T33343 hypothetical protein K07D4.8 - Caenorhabditis elegans 1.0E-118
blast T33343 hypothetical protein K07D4.8 - Caenorhabditis elegans 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 5.0E-56
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 5.0E-56
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 8.5E-21
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 2.8E-8
Sequence
Target Sequence 
>C. ELEGANS:183111_AT
gtccaacggcaatgcgatggtctccgtcaccggcggcagccgatcaagatcaccttgatc
tatgaggccttgtgcccatattgtcaaaaattcatcgcaaatcagttgggcagtgtgttc
aatcagttccagggccagttgattcttgagctagtgccatggggaaactctaggataatg
cgggacggctcattctcgtgcaatcacggacaaaaagagtgcgacgcgaatcgccttcaa
tcttgtgtcattgatattttgaaggtcaaaggagcgttgcccttcatcgtctgtttcgaa
cgtaacattcaacactatggagtcgaacacgcgatgcagacgtgctccgcgttcattcgg
agccaatatcgacagattagacaatgctacgatggtccacgtggcgttcaactccagcgc
gaagctgctcaaaagacgatgagcacccgaccgaatccgatcctcgaagttccatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCAACGGCAATGCGATGGTCTCC 591 477 391 Antisense
ATGAGGCCTTGTGCCCATATTGTCA 60 41 452 Antisense
GGCAGTGTGTTCAATCAGTTCCAGG 518 535 499 Antisense
CAGTTCCAGGGCCAGTTGATTCTTG 122 207 514 Antisense
GGATAATGCGGGACGGCTCATTCTC 695 509 563 Antisense
GAATCGCCTTCAATCTTGTGTCATT 563 329 618 Antisense
TCAAAGGAGCGTTGCCCTTCATCGT 214 627 656 Antisense
CACGCGATGCAGACGTGCTCCGCGT 635 199 718 Antisense
AATGCTACGATGGTCCACGTGGCGT 709 165 773 Antisense
TCAACTCCAGCGCGAAGCTGCTCAA 421 631 798 Antisense
GAATCCGATCCTCGAAGTTCCATAT 579 329 843 Antisense
Sequence Source Affymetrix Proprietary Database