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[183109_at] 7TM chemoreceptor, srg family

Description T09D3.5 /REP_DB=WormBase Gene ID /WP=CE13485 /TR=Q23035 /GB=AAG24197.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 13      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 31.7
(3)
A 		25.8
(1.8)
A 		1
(-3)
A 		2.8
(-2.6)
A 		31
B 4
(-2.2)
A 		5.5
(-1.8)
A 		1.1
(-3)
A 		23.9
(3)
A 		23
C 21.9
(-1.1)
A 		2.1
(-3)
A 		12.8
(-2)
A 		64.8
(3)
A 		63
avr 19.2
(0.3) 		11.1
(-1.6) 		5
(-3) 		30.5
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 13.1
(-0.8)
A 		28.7
(2.2)
A 		27.1
(1.9)
A 		2.1
(-3)
A 		32.7
(3)
A 		15.4
(-0.4)
A 		31
B 15
(2.8)
A 		9
(0.3)
A 		10
(0.7)
A 		1.4
(-3)
A 		15.4
(3)
A 		13.2
(2.1)
A 		14
C 3.7
(-2.6)
A 		38.7
(3)
A 		5.3
(-2.4)
A 		4.1
(-2.6)
A 		1.5
(-3)
A 		2.9
(-2.8)
A 		37
avr 10.6
(-0.9) 		25.5
(3) 		14.1
(0) 		2.5
(-3) 		16.5
(0.7) 		10.5
(-0.9) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 11.5
(3)
A 		5.6
(-0.2)
A 		0.3
(-3)
A 		0.4
(-2.9)
A 		11
B 1.3
(-1.7)
A 		1.4
(-1.5)
A 		0.2
(-3)
A 		5.1
(3)
A 		5
C 7.2
(0.8)
A 		0.6
(-3)
A 		4.5
(-0.7)
A 		10.9
(3)
A 		10
avr 6.7
(3) 		2.5
(-2) 		1.7
(-3) 		5.5
(1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 2.4
(-1.8)
A 		10.2
(3)
A 		5.9
(0.3)
A 		0.5
(-3)
A 		9.9
(2.8)
A 		3.8
(-1)
A 		10
B 5.2
(1.9)
A 		3
(-0.4)
A 		2.4
(-1)
A 		0.4
(-3)
A 		6.3
(3)
A 		4.9
(1.6)
A 		6
C 1.4
(-2.5)
A 		11.8
(3)
A 		1.4
(-2.5)
A 		0.8
(-2.8)
A 		0.5
(-3)
A 		1
(-2.7)
A 		11
avr 3
(-1.1) 		8.3
(3) 		3.2
(-1) 		0.6
(-3) 		5.6
(0.9) 		3.2
(-1) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183109_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12053
Sequence Type Exemplar sequence
Representative Public ID T09D3.5 NCBI
Target Description T09D3.5 /REP_DB=WormBase Gene ID /WP=CE13485 /TR=Q23035 /GB=AAG24197.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072023
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000010235 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5341951:5343789:-1 None
T09D3.5 ENSEMBL cdna:known chromosome:CEL140:V:5341951:5343789:-1 gene:T09D3.5 None
NM_072023 NCBI Caenorhabditis elegans Serpentine Receptor, class G (gamma) family member (srg-25) (srg-25) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5341703-5343789(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srg family
Gene Symbol srg-25
Ensembl T09D3.5
Entrez Gene 188326 Entrez gene
SwissProt Q23035 EMBL-EBI
WormBase CE33177 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504424 Serpentine Receptor, class G (gamma) family member (srg-25) [Caenorhabditis elegans] gb|AAG24197.2| Serpentine receptor, class g (gamma) protein 25 [Caenorhabditis elegans] 0.0
blast CAE62630 Hypothetical protein CBG06760 [Caenorhabditis briggsae] 1.0E-164
blast NP_504424 Serpentine Receptor, class G (gamma) family member (srg-25) [Caenorhabditis elegans] gb|AAG24197.2| Serpentine receptor, class g (gamma) protein 25 [Caenorhabditis elegans] 1.0E-107
blast CAE62400 Hypothetical protein CBG06487 [Caenorhabditis briggsae] 8.0E-94
blast CAE62630 Hypothetical protein CBG06760 [Caenorhabditis briggsae] 3.0E-86
blast CAE62400 Hypothetical protein CBG06487 [Caenorhabditis briggsae] 5.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR000609 EMBL-EBI Integral membrane protein Srg, nematode type 1.1E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504424.2 6 23-45,66-88,108-130,151-170,190-212,233-255
T09D3.5 6 23-45,66-88,108-130,151-170,190-212,233-255
GENEFINDER00000010235 4 23-45,80-97,117-139,160-182
Sequence
Target Sequence 
>C. ELEGANS:183109_AT
aagtcacgtcacttatttcccaatagaacgaagatccttaagtctttctgcatttatttt
tatgttgataacaaatatcaaaacatatcaactcacaaaaaagttcaagaataaattgaa
aagtttggagttatctctgacattggcaactgtcgttatcagcgcagtttttgtaattta
tattattattcaagcggttttgctgattttttccacttcgtttctcgttgaaaatttgtc
ctttggtagtactttaaagaaaatagagttcatctgcaacgatttttacctaatgagctc
tccaatagttcttattataatgaacaaacgactacgaggttctctattcaaggtggctcc
tggaatgacacaaaactcatcagcgcctagaatgtctacaacaaatgaaaatactgttag
gattattgtaaaatcaccaccagctaaaaccattacaatgtggcttcttattgaagccaa
tattactgtacaaaagattggtaaaaaaatgtgtttgggtaaaaaaaaaattttgttcgg
aaatttttcaggcaagttttcaagctctgtaggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCACGTCACTTATTTCCCAATA 472 155 591 Antisense
AGATCCTTAAGTCTTTCTGCATTTA 379 67 622 Antisense
TGGAGTTATCTCTGACATTGGCAAC 639 549 716 Antisense
TTGGCAACTGTCGTTATCAGCGCAG 680 707 733 Antisense
GAGTTCATCTGCAACGATTTTTACC 35 399 856 Antisense
AATGAGCTCTCCAATAGTTCTTATT 61 165 882 Antisense
ACGAGGTTCTCTATTCAAGGTGGCT 595 91 924 Antisense
CAAGGTGGCTCCTGGAATGACACAA 184 183 939 Antisense
ACACAAAACTCATCAGCGCCTAGAA 480 109 958 Antisense
GTAAAATCACCACCAGCTAAAACCA 669 459 1018 Antisense
AGGCAAGTTTTCAAGCTCTGTAGGT 338 17 1140 Antisense
Sequence Source Affymetrix Proprietary Database