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[183108_at]

Description C12D5.9 /REP_DB=WormBase Gene ID /WP=CE06811 /TR=Q17930 /GB=AAA98574.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 72      6grp_total > 63      4grp_total > 60      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 206.5
(0.5)
P 		197.3
(0.2)
P 		295.4
(3)
P 		82.8
(-3)
A 		213
B 175
(1.9)
P 		197.5
(2.5)
P 		214.4
(3)
P 		4
(-3)
A 		210
C 225.4
(3)
P 		212.1
(2.5)
P 		220.3
(2.8)
P 		79.7
(-3)
A 		146
avr 202.3
(1.7) 		202.3
(1.7) 		243.4
(3) 		55.5
(-3) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 208
1 2 3 4 5 6 range
A 71.4
(-3)
M 		116.9
(-1.4)
P 		205.7
(1.7)
P 		243.1
(3)
P 		191.9
(1.2)
P 		112.6
(-1.6)
P 		172
B 105.4
(-3)
P 		107.1
(-2.9)
P 		279.3
(3)
P 		223.8
(1.1)
P 		191.4
(-0)
P 		142.9
(-1.7)
P 		174
C 118.4
(-3)
P 		131.9
(-2.4)
P 		243.2
(3)
P 		232.1
(2.5)
P 		130.6
(-2.4)
P 		168.9
(-0.6)
P 		125
avr 98.4
(-3) 		118.6
(-2.2) 		242.7
(3) 		233
(2.6) 		171.3
(0) 		141.5
(-1.2) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 75.2
(2.8)
P 		42.8
(-0.2)
P 		77.2
(3)
P 		12.1
(-3)
A 		65
B 55.8
(3)
P 		48.8
(2.2)
P 		49.7
(2.3)
P 		0.9
(-3)
A 		55
C 74.6
(2.8)
P 		61
(1.5)
P 		76.8
(3)
P 		13.4
(-3)
A 		63
avr 68.5
(3) 		50.9
(1.2) 		67.9
(2.9) 		8.8
(-3) 		60

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 13.2
(-3)
M 		41.6
(0.5)
P 		44.8
(0.9)
P 		61.7
(3)
P 		57.9
(2.5)
P 		27.4
(-1.2)
P 		49
B 36.7
(-2.9)
P 		35.7
(-3)
P 		67.8
(1.6)
P 		59.3
(0.4)
P 		77.8
(3)
P 		53.3
(-0.5)
P 		42
C 43.9
(-2)
P 		40.2
(-3)
P 		61.9
(3)
P 		46.7
(-1.2)
P 		42.3
(-2.4)
P 		56.5
(1.5)
P 		22
avr 31.3
(-3) 		39.2
(-1.3) 		58.2
(2.8) 		55.9
(2.3) 		59.3
(3) 		45.7
(0.1) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183108_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12282
Sequence Type Exemplar sequence
Representative Public ID C12D5.9 NCBI
Target Description C12D5.9 /REP_DB=WormBase Gene ID /WP=CE06811 /TR=Q17930 /GB=AAA98574.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072590(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072590 NCBI Caenorhabditis elegans C12D5.9 (C12D5.9) mRNA, complete cds. 11/11 None
SNAP00000021445 ENSEMBL cdna:SNAP chromosome:CEL140:V:7690948:7692568:-1 10/11 None
GENEFINDER00000021455 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7690948:7692535:-1 11/11 None
C12D5.9 ENSEMBL cdna:known chromosome:CEL140:V:7690948:7692568:-1 gene:C12D5.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7690948-7692569(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C12D5.9
Entrez Gene 182538 Entrez gene
SwissProt Q17930 EMBL-EBI
WormBase CE06811 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98574 Hypothetical protein C12D5.9 [Caenorhabditis elegans] ref|NP_504991.1| C12D5.9 [Caenorhabditis elegans] 0.0
blast NP_001024081 R13D7.2 [Caenorhabditis elegans] gb|AAK72299.1| Hypothetical protein R13D7.2 [Caenorhabditis elegans] 1.0E-70
blast NP_001024081 R13D7.2 [Caenorhabditis elegans] gb|AAK72299.1| Hypothetical protein R13D7.2 [Caenorhabditis elegans] 3.0E-67
blast AAC69342 Hypothetical protein Y73C8C.4 [Caenorhabditis elegans] ref|NP_503848.2| Y73C8C.4 [Caenorhabditis elegans] 3.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.3E-59
Pfam IPR004920 EMBL-EBI Protein of unknown function DUF263 1.3E-59
Sequence
Target Sequence 
>C. ELEGANS:183108_AT
aaatcgtgtgttgtgagtatcgccaacgaaagaaggtgtgatgagaaagcactggaatat
ttgaactcaagttatgacaagtttgtggatattatgagcatcaaaccagacgagaaaaaa
tgttcttcattacacgatgaaatgatatcaaaacaatgccaacctgtgctcttgaaattg
ggaaatggtgtagttggatcacttgataagcttatcaaaaatgcaaatgagacgaagcct
gctgttgaaaacagaccggatgtttgtgatgagttgcagaattgtcttcaaaaaagttgt
ttttacacccagcataaccagacaaatgccaatgcatacaaagaaggttgtgaaaagcta
actcttgtaccgttctcactttgcaaattccaagtcatgattagtcccacttcgacaagt
tataagtgcgtcatcgacagtttacttaatccaagttcaacaatgcctcgcaacagtttc
ttggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCGTGTGTTGTGAGTATCGCCA 90 119 463 Antisense
AAAACAATGCCAACCTGTGCTCTTG 198 131 612 Antisense
GCAAATGAGACGAAGCCTGCTGTTG 33 317 685 Antisense
AGACCGGATGTTTGTGATGAGTTGC 271 71 715 Antisense
GTTTTTACACCCAGCATAACCAGAC 668 445 761 Antisense
GAAAAGCTAACTCTTGTACCGTTCT 706 353 814 Antisense
TGTACCGTTCTCACTTTGCAAATTC 162 559 828 Antisense
GTCATGATTAGTCCCACTTCGACAA 77 467 856 Antisense
GCGTCATCGACAGTTTACTTAATCC 597 291 890 Antisense
AATCCAAGTTCAACAATGCCTCGCA 230 167 910 Antisense
AATGCCTCGCAACAGTTTCTTGGAA 436 167 924 Antisense
Sequence Source Affymetrix Proprietary Database