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[183105_at]

Description Y32F6A.1 /REP_DB=WormBase Gene ID /WP=CE20203 /TR=Q9XXS2 /GB=CAA16308.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 275
1 2 3 4 range
A 75.9
(-3)
A 		121.3
(-1.9)
A 		128.2
(-1.7)
P 		322.2
(3)
P 		246
B 53.2
(-3)
A 		90.9
(-2.2)
A 		122
(-1.5)
A 		328.1
(3)
P 		275
C 89.5
(-3)
A 		110.5
(-2.4)
A 		142
(-1.6)
P 		309.2
(3)
P 		220
avr 72.9
(-3) 		107.6
(-2.2) 		130.7
(-1.6) 		319.8
(3) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 884
1 2 3 4 5 6 range
A 83.5
(-3)
A 		109.6
(-2.8)
A 		146.2
(-2.5)
P 		291.8
(-1.3)
P 		488.4
(0.4)
P 		799.3
(3)
P 		716
B 74.5
(-3)
A 		81.1
(-3)
A 		104.7
(-2.8)
P 		241
(-1.9)
P 		492.4
(-0.1)
P 		944.1
(3)
P 		870
C 60.2
(-3)
A 		121.4
(-2.5)
A 		146.1
(-2.4)
P 		162.8
(-2.2)
P 		543.5
(0.6)
P 		870.5
(3)
P 		810
avr 72.7
(-3) 		104
(-2.8) 		132.3
(-2.6) 		231.9
(-1.8) 		508.1
(0.3) 		871.3
(3) 		799
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 27.6
(-2.6)
A 		26.3
(-3)
A 		33.5
(-0.9)
P 		47.2
(3)
P 		21
B 17
(-3)
A 		22.5
(-2.4)
A 		28.3
(-1.7)
A 		69.9
(3)
P 		53
C 29.6
(-3)
A 		31.8
(-2.4)
A 		49.5
(2.3)
P 		52.1
(3)
P 		23
avr 24.7
(-3) 		26.9
(-2.6) 		37.1
(-0.7) 		56.4
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 337
1 2 3 4 5 6 range
A 15.4
(-3)
A 		39
(-2.2)
A 		31.8
(-2.5)
P 		74
(-1)
P 		147.4
(1.4)
P 		194.6
(3)
P 		179
B 25.9
(-3)
A 		27
(-3)
A 		25.4
(-3)
P 		63.8
(-2.3)
P 		200
(0.2)
P 		352
(3)
P 		327
C 22.3
(-3)
A 		37
(-2.7)
A 		37.2
(-2.7)
P 		32.7
(-2.8)
P 		175.9
(0.4)
P 		291.4
(3)
P 		269
avr 21.2
(-3) 		34.3
(-2.7) 		31.5
(-2.8) 		56.8
(-2.2) 		174.4
(0.6) 		279.3
(3) 		258
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183105_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12036
Sequence Type Exemplar sequence
Representative Public ID Y32F6A.1 NCBI
Target Description Y32F6A.1 /REP_DB=WormBase Gene ID /WP=CE20203 /TR=Q9XXS2 /GB=CAA16308.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073280 NCBI Caenorhabditis elegans Y32F6A.1 (Y32F6A.1) mRNA, complete cds. 11/11 None
SNAP00000010881 ENSEMBL cdna:SNAP chromosome:CEL140:V:10439598:10443633:1 11/11 None
GENEFINDER00000010893 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10439598:10440935:1 9/11 None
Y32F6A.1 ENSEMBL cdna:known chromosome:CEL140:V:10439585:10443664:1 gene:Y32F6A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10439597-10443533(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y32F6A.1
Entrez Gene 179457 Entrez gene
SwissProt Q9XXS2 EMBL-EBI
WormBase CE20203 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA16308 Hypothetical protein Y32F6A.1 [Caenorhabditis elegans] ref|NP_505681.1| Y32F6A.1 [Caenorhabditis elegans] 0.0
blast CAA16308 Hypothetical protein Y32F6A.1 [Caenorhabditis elegans] ref|NP_505681.1| Y32F6A.1 [Caenorhabditis elegans] 1.0E-157
blast CAA16308 Hypothetical protein Y32F6A.1 [Caenorhabditis elegans] ref|NP_505681.1| Y32F6A.1 [Caenorhabditis elegans] 1.0E-154
blast CAE64814 Hypothetical protein CBG09608 [Caenorhabditis briggsae] 3.0E-76
blast CAE64814 Hypothetical protein CBG09608 [Caenorhabditis briggsae] 3.0E-65
blast CAE64814 Hypothetical protein CBG09608 [Caenorhabditis briggsae] 4.0E-61
Protein Domains
Database ID Description E-Value
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.1E-5
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.1E-5
Pfam IPR001214 EMBL-EBI Nuclear protein SET 3.1E-5
Sequence
Target Sequence 
>C. ELEGANS:183105_AT
ttgccactcgtgacattcttgaaggcgagtttatcattgctccagtcccagtgaagcttt
cgtctcctgaagaatgcggccgagatgagatgggagtccttcgtccaaatattatactgt
ttaatgggctacaaaatgacttttcgttcttccaagttatcgatataaaatccagaaaaa
gaaagagaaatactcgggaatttcaatcgagaagaaagattcgcgccaatgaggcaatga
atggcgtcaacaagcccgtctatcagccgcatgcttcatattattcagacgatgaagata
ttcaaaagaataccgcatatgaaaagtatgatatgtgcatcgatttagctgattcaactg
atgaactgaaagctattcgacgaaactgtgaatccaactgcatgattcgatacgtgattc
ataatcaaagaatgcaattatttatatctgctcagagaaatatcctaatgggggaagagc
ttacacttccacatgactacgattcgaattactctagcaaggtcattcaatgcgctcatc
cttatcaaccacacaatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCACTCGTGACATTCTTGAAGG 710 701 422 Antisense
GGCGAGTTTATCATTGCTCCAGTCC 387 541 445 Antisense
CCAGTGAAGCTTTCGTCTCCTGAAG 141 273 469 Antisense
GATGAGATGGGAGTCCTTCGTCCAA 431 411 505 Antisense
GACTTTTCGTTCTTCCAAGTTATCG 50 373 559 Antisense
TGAATGGCGTCAACAAGCCCGTCTA 47 575 659 Antisense
GTCTATCAGCCGCATGCTTCATATT 145 469 679 Antisense
TCCAACTGCATGATTCGATACGTGA 422 585 814 Antisense
TACACTTCCACATGACTACGATTCG 585 639 903 Antisense
GCAAGGTCATTCAATGCGCTCATCC 509 321 938 Antisense
CTCATCCTTATCAACCACACAATGT 541 229 956 Antisense
Sequence Source Affymetrix Proprietary Database