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[183102_at]

Description C08A9.3 /REP_DB=WormBase Gene ID /WP=CE06785 /TR=Q17806 /GB=AAB53817.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 11      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 158
1 2 3 4 range
A 44.5
(-1.4)
A 		69.4
(-0.4)
A 		4.7
(-3)
A 		155.8
(3)
A 		151
B 34.6
(-2.2)
A 		35
(-2.2)
A 		27.7
(-3)
A 		81.8
(3)
A 		54
C 36.1
(-1.9)
A 		6.4
(-3)
A 		16.2
(-2.6)
A 		163
(3)
A 		157
avr 38.4
(-1.9) 		36.9
(-1.9) 		16.2
(-3) 		133.5
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 38.9
(-2.3)
A 		22.9
(-3)
A 		28.3
(-2.8)
A 		94.6
(0.2)
M 		159
(3)
P 		99
(0.4)
P 		136
B 36.4
(-2.1)
A 		12.3
(-3)
A 		23.5
(-2.6)
A 		115.1
(0.8)
P 		173.5
(3)
P 		112.1
(0.7)
P 		161
C 35.4
(-2.2)
A 		59.3
(-1.1)
A 		17.9
(-3)
A 		111.4
(1.4)
A 		145.4
(3)
P 		112.3
(1.4)
P 		128
avr 36.9
(-2.4) 		31.5
(-2.6) 		23.2
(-3) 		107
(0.7) 		159.3
(3) 		107.8
(0.7) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 16.2
(1.2)
A 		15.1
(0.9)
A 		1.2
(-3)
A 		22.8
(3)
A 		22
B 11
(-0.5)
A 		8.6
(-1.8)
A 		6.4
(-3)
A 		17.4
(3)
A 		11
C 11.9
(-0.6)
A 		1.8
(-3)
A 		5.7
(-2.1)
A 		27.5
(3)
A 		26
avr 13
(-0.2) 		8.5
(-1.6) 		4.4
(-3) 		22.6
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 7.2
(-2.9)
A 		8.1
(-2.7)
A 		6.2
(-3)
A 		24
(-0.4)
M 		48
(3)
P 		24.1
(-0.4)
P 		42
B 12.7
(-2.2)
A 		4.1
(-3)
A 		5.7
(-2.9)
A 		30.5
(-0.6)
P 		70.5
(3)
P 		41.8
(0.4)
P 		66
C 13.1
(-1.8)
A 		18.1
(-1.1)
A 		4.6
(-3)
A 		22.4
(-0.5)
A 		47.1
(3)
P 		37.6
(1.7)
P 		43
avr 11
(-2.3) 		10.1
(-2.4) 		5.5
(-3) 		25.6
(-0.6) 		55.2
(3) 		34.5
(0.5) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183102_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17636
Sequence Type Exemplar sequence
Representative Public ID C08A9.3 NCBI
Target Description C08A9.3 /REP_DB=WormBase Gene ID /WP=CE06785 /TR=Q17806 /GB=AAB53817.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078360(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078360 NCBI Caenorhabditis elegans C08A9.3 (C08A9.3) mRNA, complete cds. 11/11 None
GENEFINDER00000037429 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17087401:17091624:-1 11/11 None
C08A9.3 ENSEMBL cdna:known chromosome:CEL140:X:17087794:17088728:-1 gene:C08A9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037420 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17087793-17088728(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08A9.3
Entrez Gene 182383 Entrez gene
SwissProt Q17806 EMBL-EBI
WormBase CE06785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 1.0E-169
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 1.0E-158
blast AAB53817 Hypothetical protein C08A9.3 [Caenorhabditis elegans] ref|NP_510761.1| C08A9.3 [Caenorhabditis elegans] 1.0E-142
blast AAB53817 Hypothetical protein C08A9.3 [Caenorhabditis elegans] ref|NP_510761.1| C08A9.3 [Caenorhabditis elegans] 1.0E-141
blast AAB71247 Hypothetical protein C30E1.2 [Caenorhabditis elegans] ref|NP_510741.1| C30E1.2 [Caenorhabditis elegans] 2.0E-60
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 2.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510761.1 5 27-49,56-78,115-134,139-161,171-193
C08A9.3 5 27-49,56-78,115-134,139-161,171-193
GENEFINDER00000037429 10 244-266,323-342,374-396,417-434,444-461,473-492,497-519,560-579,584-606,618-637
Sequence
Target Sequence 
>C. ELEGANS:183102_AT
tgaaaatattgttctctctcaccgcaatttcctcaacagtttacttttgctatcagtact
tttatgagaggccttccgggcttcaagggaaccaatggatcacacctcctttcgagagtc
cacagctttatctgagtgatgcaaatgggatatacaacccacttcgctcaaaagttgtat
tgatcgtgttgctgatatgcctctcagttgtctgcgcaattctacctctgctgacatctg
aaagcgcgagtaactcggcgatcatttgtcttggaagaggtcaaattggaatatacctag
tttattacgccgttcaaaaatgccgatttgagagacaatcctttactttgttctataaaa
tctgctgtactctcattttcattgtctttatgttaatggaatgcctaaatcgttacctcg
ccaatttcatgttaacctacaatgttttattgacacctgccaaatcccgtcagctcaata
tggattgtgttctcccgggaattgacttgaacgacctgcggcattac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAATATTGTTCTCTCTCACCGC 445 573 182 Antisense
ACCGCAATTTCCTCAACAGTTTACT 464 89 202 Antisense
TTATGAGAGGCCTTCCGGGCTTCAA 438 681 243 Antisense
TCCTTTCGAGAGTCCACAGCTTTAT 470 591 288 Antisense
TGATCGTGTTGCTGATATGCCTCTC 42 567 362 Antisense
TCTCAGTTGTCTGCGCAATTCTACC 692 611 383 Antisense
GTAACTCGGCGATCATTTGTCTTGG 574 461 431 Antisense
TCTGCTGTACTCTCATTTTCATTGT 535 609 542 Antisense
TGGAATGCCTAAATCGTTACCTCGC 183 547 578 Antisense
TACCTCGCCAATTTCATGTTAACCT 457 569 595 Antisense
TGACTTGAACGACCTGCGGCATTAC 193 571 684 Antisense
Sequence Source Affymetrix Proprietary Database