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[183101_at]

Description F48G7.9 /REP_DB=WormBase Gene ID /WP=CE10770 /TR=O44588 /GB=AAG24125.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 02      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 37.5
(-3)
A 		48.8
(-2.5)
A 		54.2
(-2.3)
A 		181.4
(3)
A 		144
B 56.4
(-2)
A 		61.6
(-1.5)
A 		46
(-3)
A 		109.5
(3)
A 		64
C 60.3
(-2.3)
A 		41.6
(-3)
A 		49.8
(-2.7)
A 		201.2
(3)
P 		160
avr 51.4
(-2.9) 		50.7
(-3) 		50
(-3) 		164
(3) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 46.2
(1.5)
A 		42.8
(0.9)
A 		54.7
(3)
A 		48.6
(1.9)
A 		20.7
(-3)
A 		52.6
(2.6)
A 		34
B 66.4
(3)
M 		65
(2.8)
A 		49.3
(0.6)
A 		46.7
(0.3)
A 		53.1
(1.2)
P 		23
(-3)
A 		43
C 23.4
(-2.5)
A 		55.8
(1.9)
P 		31.3
(-1.4)
A 		64.2
(3)
A 		45
(0.4)
A 		19.8
(-3)
A 		44
avr 45.3
(0.6) 		54.5
(3) 		45.1
(0.5) 		53.2
(2.7) 		39.6
(-0.9) 		31.8
(-3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 13.7
(-1.8)
A 		10.6
(-3)
A 		14.2
(-1.7)
A 		26.6
(3)
A 		16
B 18
(0.5)
A 		15.2
(-0.9)
A 		10.7
(-3)
A 		23.3
(3)
A 		13
C 20
(-0.8)
A 		11.9
(-3)
A 		17.4
(-1.5)
A 		33.9
(3)
P 		22
avr 17.2
(-1.2) 		12.6
(-3) 		14.1
(-2.4) 		27.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 8.5
(-1.5)
A 		15.2
(3)
A 		11.9
(0.8)
A 		12.3
(1.1)
A 		6.2
(-3)
A 		12.8
(1.4)
A 		9
B 23.1
(3)
M 		21.6
(2.4)
A 		12
(-1.6)
A 		12.4
(-1.4)
A 		21.6
(2.4)
P 		8.6
(-3)
A 		15
C 8.7
(-1.8)
A 		17
(3)
P 		8
(-2.2)
A 		12.9
(0.6)
A 		14.6
(1.6)
A 		6.6
(-3)
A 		10
avr 13.4
(-0.1) 		17.9
(3) 		10.6
(-2.1) 		12.5
(-0.8) 		14.1
(0.3) 		9.3
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183101_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15386
Sequence Type Exemplar sequence
Representative Public ID F48G7.9 NCBI
Target Description F48G7.9 /REP_DB=WormBase Gene ID /WP=CE10770 /TR=O44588 /GB=AAG24125.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070870 NCBI Caenorhabditis elegans F48G7.9 (F48G7.9) mRNA, complete cds. 11/11 None
SNAP00000037294 ENSEMBL cdna:SNAP chromosome:CEL140:V:627888:629259:-1 11/11 None
GENEFINDER00000037308 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:626935:628445:-1 11/11 None
F48G7.9 ENSEMBL cdna:known chromosome:CEL140:V:627888:628445:-1 gene:F48G7.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:627887-628445(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F48G7.9
Entrez Gene 185997 Entrez gene
SwissProt O44588 EMBL-EBI
WormBase CE10770 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24124 Hypothetical protein F48G7.8 [Caenorhabditis elegans] ref|NP_503270.1| F48G7.8 [Caenorhabditis elegans] 1.0E-93
blast AAG24121 Hypothetical protein F48G7.5 [Caenorhabditis elegans] ref|NP_503267.1| F48G7.5 [Caenorhabditis elegans] 2.0E-85
blast AAG24123 Hypothetical protein F48G7.7 [Caenorhabditis elegans] ref|NP_503269.1| F48G7.7 [Caenorhabditis elegans] 1.0E-75
blast AAG24125 Hypothetical protein F48G7.9 [Caenorhabditis elegans] ref|NP_503271.1| F48G7.9 [Caenorhabditis elegans] 7.0E-50
blast AAG24119 Hypothetical protein F48G7.10 [Caenorhabditis elegans] ref|NP_503273.1| F48G7.10 [Caenorhabditis elegans] 3.0E-25
blast CAB07853 Hypothetical protein R12G8.1 [Caenorhabditis elegans] ref|NP_507486.1| R12G8.1 [Caenorhabditis elegans] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.6E-13
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 4.6E-13
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 1.0E-16
Pfam IPR003582 EMBL-EBI Metridin-like ShK toxin 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:183101_AT
tgcaattgcaaactccacacgtatccaatacatacgatggttcgaaagttcatgaggtgg
ctggtcacaagttcagagctgcagctctacttcaaccaacttgttgtgctttttgctcca
agattatatatgggcttggaaaacaaggatataggtgtctaggttgcgaaacagtagtgc
acaagaaatgccacgcctccatgatcacatgttgtgtttatgattcctcgcgccgttcgt
cactggcttcagtgtccacgagtacaaaaaattggccatctaaatcttcatctgcgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCAATTGCAAACTCCACACGTATC 183 577 26 Antisense
GAAAGTTCATGAGGTGGCTGGTCAC 252 361 69 Antisense
GGCTGGTCACAAGTTCAGAGCTGCA 551 539 84 Antisense
CAGAGCTGCAGCTCTACTTCAACCA 590 205 99 Antisense
CAACTTGTTGTGCTTTTTGCTCCAA 422 189 122 Antisense
AGTGCACAAGAAATGCCACGCCTCC 137 61 201 Antisense
CCACGCCTCCATGATCACATGTTGT 32 275 216 Antisense
ATGTTGTGTTTATGATTCCTCGCGC 397 47 234 Antisense
GTTCGTCACTGGCTTCAGTGTCCAC 656 441 260 Antisense
CTGGCTTCAGTGTCCACGAGTACAA 64 241 268 Antisense
GGCCATCTAAATCTTCATCTGCGCC 35 545 299 Antisense
Sequence Source Affymetrix Proprietary Database