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[183100_at]

Description C37A5.10 /REP_DB=WormBase Gene ID /WP=CE20546 /TR=O62094 /GB=CAB07336.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 43      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 89
(-3)
P 		107.3
(0.9)
P 		117.5
(3)
M 		102
(-0.3)
A 		29
B 105.5
(-1.8)
P 		190.1
(3)
A 		84.2
(-3)
P 		87.3
(-2.8)
A 		106
C 104.9
(-0.8)
P 		153
(3)
A 		76.6
(-3)
M 		139.1
(1.9)
A 		76
avr 99.8
(-2.3) 		150.1
(3) 		92.8
(-3) 		109.5
(-1.3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 26.4
(-3)
A 		63
(1.2)
A 		79.3
(3)
A 		32.8
(-2.3)
A 		56.1
(0.4)
A 		56.1
(0.4)
A 		53
B 76
(1.4)
P 		81.1
(2)
A 		82.9
(2.2)
A 		89.9
(3)
A 		80.9
(2)
A 		37.9
(-3)
A 		52
C 121.1
(3)
P 		95.8
(1.5)
A 		82.4
(0.7)
A 		37
(-2)
A 		70.7
(0)
A 		19.6
(-3)
A 		102
avr 74.5
(2) 		80
(2.8) 		81.5
(3) 		53.2
(-0.9) 		69.2
(1.3) 		37.9
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 32.4
(3)
P 		23.3
(-0.1)
P 		30.7
(2.4)
M 		14.9
(-3)
A 		18
B 33.6
(0.2)
P 		47
(3)
A 		19.5
(-2.8)
P 		18.6
(-3)
A 		28
C 34.7
(0.3)
P 		44
(3)
A 		26.7
(-2.1)
M 		23.5
(-3)
A 		21
avr 33.6
(1.6) 		38.1
(3) 		25.6
(-0.9) 		19
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 4.9
(-3)
A 		22.4
(3)
A 		17.3
(1.3)
A 		8.3
(-1.8)
A 		16.9
(1.1)
A 		13.7
(0)
A 		18
B 26.4
(0.9)
P 		27
(1.1)
A 		20.1
(-1.1)
A 		23.8
(0.1)
A 		32.9
(3)
A 		14.1
(-3)
A 		19
C 44.9
(3)
P 		29.2
(0.5)
A 		21
(-0.7)
A 		7.4
(-2.9)
A 		22.9
(-0.4)
A 		6.6
(-3)
A 		38
avr 25.4
(2.7) 		26.2
(3) 		19.5
(0.3) 		13.2
(-2.3) 		24.2
(2.2) 		11.5
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183100_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1495
Sequence Type Exemplar sequence
Representative Public ID C37A5.10 NCBI
Target Description C37A5.10 /REP_DB=WormBase Gene ID /WP=CE20546 /TR=O62094 /GB=CAB07336.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061073
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061073 NCBI Caenorhabditis elegans PolyRaY family member (pry-1) (pry-1) mRNA, complete cds. A 
C37A5.9 ENSEMBL cdna:known chromosome:CEL140:I:14180958:14187478:-1 gene:C37A5.9 A 
SNAP00000011861 ENSEMBL cdna:SNAP chromosome:CEL140:I:14168126:14187474:-1 None
GENEFINDER00000011871 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14181154:14187478:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14186113-14187934(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pry-1
Ensembl C37A5.9
Entrez Gene 173287 Entrez gene
SwissProt O62090 EMBL-EBI
WormBase CE30125 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07332 Hypothetical protein C37A5.9 [Caenorhabditis elegans] ref|NP_493474.2| PolyRaY family member (pry-1) [Caenorhabditis elegans] gb|AAL77082.1| PRY-1 [Caenorhabditis elegans] 0.0
blast CAE71793 Hypothetical protein CBG18802 [Caenorhabditis briggsae] 0.0
blast CAE71793 Hypothetical protein CBG18802 [Caenorhabditis briggsae] 1.0E-138
blast CAB07337 Hypothetical protein C37A5.1 [Caenorhabditis elegans] ref|NP_493472.1| C37A5.1 [Caenorhabditis elegans] 2.0E-85
blast T19808 hypothetical protein C37A5.10 - Caenorhabditis elegans 8.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 3.9E-20
Pfam IPR000615 EMBL-EBI Bestrophin 4.0E-40
Sequence
Target Sequence 
>C. ELEGANS:183100_AT
ctgtgtgtgtgtactactactcttcccaatacaccccattactctccgtcactatctctg
cgtctctcacccccgccactctctcgctctcgcccattcattgagtgcatggagacccat
ctcggttgggcgcgaagcctggaggccgttctatccgatcgatcggcactcgacgcgttt
caggaatggcttattgagtactcctcgcctcagtacctcgacttgttcttcgcaatccga
gcatacgaacgaatggcgttggagggaaaaccggagaaatcccaactttccaagtcaata
tactcgaaatttttgtcctctcggaccggaaactgcgaagcaattcccaagcattttagg
gctccgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTGTGTGTGTACTACTACTCTTC 402 239 24 Antisense
CTCTCGCCCATTCATTGAGTGCATG 132 231 110 Antisense
TGAGTGCATGGAGACCCATCTCGGT 700 567 125 Antisense
TCTCGGTTGGGCGCGAAGCCTGGAG 507 601 143 Antisense
AGGCCGTTCTATCCGATCGATCGGC 518 53 166 Antisense
GCACTCGACGCGTTTCAGGAATGGC 62 317 189 Antisense
ATGGCTTATTGAGTACTCCTCGCCT 242 53 209 Antisense
ACTTGTTCTTCGCAATCCGAGCATA 105 103 244 Antisense
GGAGAAATCCCAACTTTCCAAGTCA 154 519 296 Antisense
GTCCTCTCGGACCGGAAACTGCGAA 708 465 338 Antisense
TTCCCAAGCATTTTAGGGCTCCGAT 508 695 367 Antisense
Sequence Source Affymetrix Proprietary Database