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[183099_s_at]

Description W04B5.6 /REP_DB=WormBase Gene ID /WP=CE20143 /TR=Q9UA58 /GB=AAC68919.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 16      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 49
(-3)
A 		56.6
(-2.3)
A 		100.6
(1.7)
A 		115.5
(3)
P 		67
B 38.4
(-1.5)
A 		73.3
(3)
A 		64.2
(1.8)
A 		27.1
(-3)
A 		46
C 52.6
(-3)
A 		90
(-1.9)
A 		70.3
(-2.5)
A 		258.6
(3)
P 		206
avr 46.7
(-3) 		73.3
(-1.2) 		78.4
(-0.8) 		133.7
(3) 		87

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 72.5
(3)
A 		64.6
(2.2)
A 		45.3
(0.2)
M 		14.7
(-3)
A 		17
(-2.8)
A 		16.7
(-2.8)
A 		58
B 94.8
(2.1)
A 		107
(3)
P 		56.4
(-0.7)
A 		64
(-0.1)
M 		24.6
(-3)
A 		32.1
(-2.5)
A 		82
C 94
(3)
P 		87.6
(2.5)
P 		32.3
(-1.7)
A 		36.7
(-1.4)
A 		24.1
(-2.3)
A 		15.4
(-3)
A 		79
avr 87.1
(3) 		86.4
(2.9) 		44.7
(-0.9) 		38.5
(-1.4) 		21.9
(-3) 		21.4
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 17.8
(-0.6)
A 		12.3
(-3)
A 		26.3
(3)
A 		16.9
(-1)
P 		14
B 12.2
(0.1)
A 		18.1
(3)
A 		14.9
(1.4)
A 		5.8
(-3)
A 		12
C 17.4
(-3)
A 		25.9
(-1.1)
A 		24.5
(-1.4)
A 		43.6
(3)
P 		26
avr 15.8
(-3) 		18.8
(-0.1) 		21.9
(2.8) 		22.1
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 13.4
(0)
A 		23
(3)
A 		9.9
(-1.1)
M 		3.7
(-3)
A 		5.1
(-2.6)
A 		4.1
(-2.9)
A 		19
B 33
(2.4)
A 		35.6
(3)
P 		13.7
(-2.1)
A 		16.9
(-1.4)
M 		10
(-3)
A 		12
(-2.5)
A 		26
C 34.8
(3)
P 		26.7
(1.4)
P 		8.2
(-2.4)
A 		7.4
(-2.5)
A 		7.8
(-2.5)
A 		5.1
(-3)
A 		30
avr 27.1
(2.6) 		28.4
(3) 		10.6
(-2) 		9.3
(-2.4) 		7.6
(-2.9) 		7.1
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183099_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7013
Sequence Type Exemplar sequence
Representative Public ID W04B5.6 NCBI
Target Description W04B5.6 /REP_DB=WormBase Gene ID /WP=CE20143 /TR=Q9UA58 /GB=AAC68919.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065155(11), NM_065154(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065155 NCBI Caenorhabditis elegans E02H9.6 (E02H9.6) mRNA, complete cds. 11/11 A 
NM_065154 NCBI Caenorhabditis elegans W04B5.6 (W04B5.6) mRNA, complete cds. 11/11 None
GENEFINDER00000038965 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:2436093:2439372:1 11/11 None
W04B5.6 ENSEMBL cdna:known chromosome:CEL140:III:2433538:2435215:-1 gene:W04B5.6 11/11 None
E02H9.6 ENSEMBL cdna:known chromosome:CEL140:III:2436093:2442316:1 gene:E02H9.6 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000019376 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:2436092-2437770(+) 93.89 100.0
chrIII:2433537-2435215(-) 93.52 100.0
Public Domain and Genome References
Gene Title

Ensembl W04B5.6
E02H9.6
Entrez Gene 184001 Entrez gene
189183 Entrez gene
SwissProt Q9TZA2 EMBL-EBI
Q9UA58 EMBL-EBI
WormBase CE09123 Wormbase
CE20143 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68771 Hypothetical protein E02H9.6 [Caenorhabditis elegans] ref|NP_497556.1| E02H9.6 [Caenorhabditis elegans] 0.0
blast AAC68919 Hypothetical protein W04B5.6 [Caenorhabditis elegans] ref|NP_497555.1| W04B5.6 [Caenorhabditis elegans] 1.0E-101
blast AAC68771 Hypothetical protein E02H9.6 [Caenorhabditis elegans] ref|NP_497556.1| E02H9.6 [Caenorhabditis elegans] 1.0E-101
blast AAC68919 Hypothetical protein W04B5.6 [Caenorhabditis elegans] ref|NP_497555.1| W04B5.6 [Caenorhabditis elegans] 1.0E-100
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497556.1 6 13-32,47-64,76-98,108-125,277-299,348-367
NP_497555.1 4 13-32,47-64,76-98,108-125
W04B5.6 4 13-32,47-64,76-98,108-125
E02H9.6 6 13-32,47-64,76-98,108-125,277-299,348-367
GENEFINDER00000038965 5 13-32,47-64,76-98,108-125,217-234
Sequence
Target Sequence 
>C. ELEGANS:183099_S_AT
tatatttccactaatgtatccctcgcaatcatatgtactgctcttttcatgtttagcatg
catttttattcaagatctgagaacaaatctggacagctgaaagacgcttcgatatgcatg
tttgcatctactattctaattgtttttgaacgagtgttgttttggagtcgggaaaataat
aacgagaaatttggtgaacttgcttattgtatattcgttttcgtcaggatttctatttat
ttagtgacaattttttccgaagttgtgtttttaaagatgggatcagacgacgcaccaatc
tcctttttatgtttcacgtcggttttgttcgtttatgcctgcatttatgtgaaatactgc
aaaactaagaatttttggcccaatctttttcagattttcttggaacttttcactctttct
agtggttgtagaagttgtcaggtgttaaagacttctacactcggtaagggacttccatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATATTTCCACTAATGTATCCCTCG 31 663 40 Antisense
GTATCCCTCGCAATCATATGTACTG 229 455 55 Antisense
TATGTACTGCTCTTTTCATGTTTAG 183 657 71 Antisense
AAGACGCTTCGATATGCATGTTTGC 475 153 140 Antisense
GCATGTTTGCATCTACTATTCTAAT 226 311 155 Antisense
AGATGGGATCAGACGACGCACCAAT 664 67 314 Antisense
CAATCTCCTTTTTATGTTTCACGTC 515 181 335 Antisense
GTCGGTTTTGTTCGTTTATGCCTGC 260 473 357 Antisense
ATTTTTGGCCCAATCTTTTTCAGAT 415 15 410 Antisense
TCTTGGAACTTTTCACTCTTTCTAG 411 617 437 Antisense
TACACTCGGTAAGGGACTTCCATGT 304 639 495 Antisense
Sequence Source Affymetrix Proprietary Database