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[183098_at]

Description M02F4.1 /REP_DB=WormBase Gene ID /WP=CE04762 /TR=Q21472 /GB=AAA83204.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 44      4grp_total > 40      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 10.3
(-3)
A 		30.8
(-0.2)
A 		54.6
(3)
A 		39.9
(1)
A 		44
B 23.7
(-2)
A 		11.8
(-3)
A 		79.8
(3)
A 		44.2
(-0.1)
A 		68
C 29.8
(-2.1)
A 		21.5
(-3)
A 		74.2
(3)
A 		27.5
(-2.3)
A 		53
avr 21.3
(-3) 		21.4
(-3) 		69.5
(3) 		37.2
(-1) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 92.6
(3)
A 		28.7
(-2.3)
A 		39
(-1.4)
A 		51.3
(-0.4)
A 		19.7
(-3)
A 		66.8
(0.9)
A 		73
B 47.1
(-0.4)
A 		10.9
(-3)
A 		94.7
(3)
A 		10.4
(-3)
A 		36.8
(-1.1)
A 		28.2
(-1.7)
A 		84
C 45.4
(1.3)
A 		16.6
(-2.6)
A 		52.5
(2.3)
A 		13.7
(-3)
A 		57.6
(3)
A 		15.6
(-2.7)
A 		44
avr 61.7
(2.9) 		18.7
(-3) 		62.1
(3) 		25.1
(-2.1) 		38
(-0.3) 		36.9
(-0.5) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 3.7
(-3)
A 		6.7
(-1.3)
A 		14.3
(3)
A 		5.8
(-1.8)
A 		11
B 7.6
(-1.2)
A 		2.9
(-3)
A 		18.5
(3)
A 		9.4
(-0.5)
A 		16
C 9.9
(-1.5)
A 		6.2
(-2.5)
A 		25.9
(3)
A 		4.6
(-3)
A 		21
avr 7.1
(-2.2) 		5.3
(-3) 		19.6
(3) 		6.6
(-2.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 17.1
(3)
A 		10.2
(-0.7)
A 		8.5
(-1.6)
A 		13
(0.8)
A 		6
(-3)
A 		16.3
(2.6)
A 		11
B 16.4
(1)
A 		3.6
(-2.7)
A 		23
(3)
A 		2.7
(-3)
A 		14.9
(0.6)
A 		10.5
(-0.7)
A 		20
C 16.8
(2.3)
A 		5.1
(-2.1)
A 		13.4
(1)
A 		2.8
(-3)
A 		18.6
(3)
A 		5.2
(-2.1)
A 		16
avr 16.8
(3) 		6.3
(-2.9) 		15
(2) 		6.2
(-3) 		13.2
(1) 		10.7
(-0.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183098_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18493
Sequence Type Exemplar sequence
Representative Public ID M02F4.1 NCBI
Target Description M02F4.1 /REP_DB=WormBase Gene ID /WP=CE04762 /TR=Q21472 /GB=AAA83204.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076115(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076115 NCBI Caenorhabditis elegans M02F4.1 (M02F4.1) mRNA, complete cds. 11/11 None
GENEFINDER00000027805 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3027384:3030753:-1 11/11 None
SNAP00000027797 ENSEMBL cdna:SNAP chromosome:CEL140:X:3028050:3030753:-1 10/11 None
M02F4.1 ENSEMBL cdna:known chromosome:CEL140:X:3027244:3030753:-1 gene:M02F4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3027243-3029112(-) 87.58 87.58
Public Domain and Genome References
Gene Title
Ensembl M02F4.1
Entrez Gene 187400 Entrez gene
SwissProt Q21472 EMBL-EBI
WormBase CE04762 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83204 Hypothetical protein M02F4.1 [Caenorhabditis elegans] ref|NP_508516.1| M02F4.1 [Caenorhabditis elegans] 0.0
blast AAA83204 Hypothetical protein M02F4.1 [Caenorhabditis elegans] ref|NP_508516.1| M02F4.1 [Caenorhabditis elegans] 1.0E-143
blast CAA94163 Hypothetical protein R04D3.3 [Caenorhabditis elegans] ref|NP_510210.1| R04D3.3 [Caenorhabditis elegans] 3.0E-50
blast CAA94162 Hypothetical protein R04D3.2 [Caenorhabditis elegans] ref|NP_510208.1| R04D3.2 [Caenorhabditis elegans] 9.0E-29
blast CAA94162 Hypothetical protein R04D3.2 [Caenorhabditis elegans] ref|NP_510208.1| R04D3.2 [Caenorhabditis elegans] 1.0E-28
Sequence
Target Sequence 
>C. ELEGANS:183098_AT
aacacgtcgtcacaacaacaacgctagaggtcgctcatccctaaatcaccgtgacgaaga
tgaatcggactatgagaatgaggattatgaagaggaggaaaataagtctcgtaaagccaa
ccgtcgcagtcgcaccgatgatgatgacaatctcgatgatggagataacttcaaaccccg
cagaaaacctctccaggatactcaggaagaggataaccggccaaaacgagaagtattgga
tctgcccccacttacgtgcccagactgtcctgatgggatcgaaacactaggctcagatct
ggactttgctttttcgactatctactcatggaccagaagagcctgctcacaaaacgaagc
aacaaaacagacatgcttcgcattcttgaaacttttgaaacaagttggagttgtcgaagt
ttatccaggaattcaacaaggttctccccatgtcctttgcgccaagaatgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACACGTCGTCACAACAACAACGCT 594 135 612 Antisense
CTCATCCCTAAATCACCGTGACGAA 586 227 645 Antisense
TAAGTCTCGTAAAGCCAACCGTCGC 136 633 714 Antisense
GAAAACCTCTCCAGGATACTCAGGA 505 353 794 Antisense
ACGAGAAGTATTGGATCTGCCCCCA 301 93 837 Antisense
GTGCCCAGACTGTCCTGATGGGATC 388 477 867 Antisense
GCTCAGATCTGGACTTTGCTTTTTC 406 301 902 Antisense
TTGCTTTTTCGACTATCTACTCATG 424 703 917 Antisense
CATGGACCAGAAGAGCCTGCTCACA 391 209 938 Antisense
ACATGCTTCGCATTCTTGAAACTTT 307 107 982 Antisense
CCATGTCCTTTGCGCCAAGAATGAC 582 269 1059 Antisense
Sequence Source Affymetrix Proprietary Database