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[183097_at]

Description K06C4.7 /REP_DB=WormBase Gene ID /WP=CE11814 /TR=Q9GYH0 /GB=AAF98221.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 01      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 18.1
(-1.3)
A 		5.2
(-3)
A 		5.3
(-3)
A 		51.6
(3)
A 		46
B 18.7
(0.5)
A 		3.3
(-3)
A 		29.7
(3)
A 		3.9
(-2.9)
A 		26
C 7.7
(-3)
A 		9
(-2.9)
A 		10.1
(-2.8)
A 		66
(3)
A 		58
avr 14.8
(-1.4) 		5.8
(-3) 		15
(-1.4) 		40.5
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 11
(-0.7)
A 		5.3
(-2.1)
A 		23.8
(2.6)
A 		1.7
(-3)
A 		3.7
(-2.5)
A 		25.5
(3)
A 		24
B 1.7
(-3)
A 		24.2
(1.7)
A 		4.6
(-2.4)
A 		2.8
(-2.8)
A 		15.9
(-0)
A 		30.5
(3)
A 		29
C 4.5
(-2.6)
A 		41.2
(3)
A 		1.7
(-3)
A 		1.9
(-3)
A 		3.9
(-2.7)
A 		4.7
(-2.5)
A 		40
avr 5.7
(-2) 		23.6
(3) 		10
(-0.8) 		2.1
(-3) 		7.8
(-1.4) 		20.2
(2.1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.6
(2.1)
A 		1.1
(-3)
A 		1.4
(-2.7)
A 		7.6
(3)
A 		7
B 6
(2.1)
A 		0.8
(-3)
A 		6.9
(3)
A 		0.8
(-3)
A 		6
C 2.6
(-3)
A 		2.6
(-3)
A 		3.5
(-2.4)
A 		11.1
(3)
A 		9
avr 5.1
(1.3) 		1.5
(-3) 		3.9
(-0.1) 		6.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-1.3)
A 		1.9
(-1.4)
A 		5.2
(2)
A 		0.4
(-3)
A 		1.1
(-2.3)
A 		6.2
(3)
A 		6
B 0.6
(-3)
A 		8.1
(1.2)
A 		1.1
(-2.7)
A 		0.7
(-2.9)
A 		6.5
(0.3)
A 		11.4
(3)
A 		11
C 1.7
(-2.4)
A 		12.6
(3)
A 		0.4
(-3)
A 		0.4
(-3)
A 		1.3
(-2.6)
A 		1.6
(-2.4)
A 		12
avr 1.4
(-2.2) 		7.5
(3) 		2.2
(-1.5) 		0.5
(-3) 		3
(-0.9) 		6.4
(2.1) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183097_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12458
Sequence Type Exemplar sequence
Representative Public ID K06C4.7 NCBI
Target Description K06C4.7 /REP_DB=WormBase Gene ID /WP=CE11814 /TR=Q9GYH0 /GB=AAF98221.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072902(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072902 NCBI Caenorhabditis elegans K06C4.7 (K06C4.7) mRNA, complete cds. 11/11 None
K06C4.7 ENSEMBL cdna:known chromosome:CEL140:V:8917502:8919382:1 gene:K06C4.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018192 7/11 Cross Hyb Matching Probes None
GENEFINDER00000018207 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8917502-8919383(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K06C4.7
Entrez Gene 187064 Entrez gene
SwissProt Q9GYH0 EMBL-EBI
WormBase CE11814 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF98221 Hypothetical protein K06C4.7 [Caenorhabditis elegans] ref|NP_505303.1| K06C4.7 [Caenorhabditis elegans] 3.0E-93
Sequence
Target Sequence 
>C. ELEGANS:183097_AT
gttgaggacgccgtctcacaagttgagacgaagcaggatcttccagaggctttgtggact
caaaaaaactgcatgcaattctctacagtgcgtgtcatcatcgatgatgacatgataaac
tccagaaatcgaacatctatcacatcgttgccaacgaatcaaaaacattcaatttgttcg
agtgaaggacaagaaggaagcgacaaacataaggagcatctcaaacaaattggaattgga
gtggcgaatgcttttcaacaaattacattgatagaaaaaaatgctgggaggcctggagga
aaagatgatgatgacgatttgaacgatgaaaaagatgatgaagatttgaatttgatagta
cttagattggaagttccaaaaaagttcggaacatgggccacttgggacggtggagacaat
tcggataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGAGGACGCCGTCTCACAAGTTG 243 437 64 Antisense
GACGAAGCAGGATCTTCCAGAGGCT 447 379 90 Antisense
GATCTTCCAGAGGCTTTGTGGACTC 623 419 100 Antisense
CTGCATGCAATTCTCTACAGTGCGT 336 237 132 Antisense
CTACAGTGCGTGTCATCATCGATGA 259 225 146 Antisense
GAACATCTATCACATCGTTGCCAAC 34 351 194 Antisense
GCGACAAACATAAGGAGCATCTCAA 549 289 263 Antisense
TGGAGTGGCGAATGCTTTTCAACAA 657 549 300 Antisense
AAAATGCTGGGAGGCCTGGAGGAAA 471 133 341 Antisense
GTTCGGAACATGGGCCACTTGGGAC 342 437 447 Antisense
GGGACGGTGGAGACAATTCGGATAA 278 493 467 Antisense
Sequence Source Affymetrix Proprietary Database