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[183095_at] 7TM chemoreceptor, srx family

Description R03H4.2 /REP_DB=WormBase Gene ID /WP=CE07405 /TR=Q21685 /GB=AAC48102.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 0      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 04      4grp_total > 11      6grp_cgc > 50      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 151.3
(-2.8)
P 		148
(-3)
P 		176.8
(-1.6)
P 		268.9
(3)
P 		121
B 178.1
(-1.2)
P 		147.1
(-2.5)
P 		134.6
(-3)
A 		279.9
(3)
P 		145
C 155.3
(-2.1)
P 		214.1
(-1)
P 		107
(-3)
P 		425.9
(3)
P 		319
avr 161.6
(-2.3) 		169.7
(-2) 		139.5
(-3) 		324.9
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 160.9
(0.4)
P 		116
(-2.5)
P 		200.4
(3)
P 		139.9
(-0.9)
P 		133.1
(-1.4)
P 		108.1
(-3)
P 		92
B 162.2
(3)
P 		118.5
(-0.6)
P 		90.1
(-3)
P 		128.4
(0.2)
P 		150
(2)
P 		133.9
(0.6)
P 		72
C 137.6
(-0.5)
P 		176.2
(3)
P 		125.8
(-1.6)
P 		158.7
(1.4)
P 		124.9
(-1.7)
P 		110.9
(-3)
P 		65
avr 153.6
(3) 		136.9
(0.2) 		138.8
(0.5) 		142.3
(1.1) 		136
(0.1) 		117.6
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 55.1
(3)
P 		32.1
(-3)
P 		46.2
(0.7)
P 		39.4
(-1.1)
P 		23
B 56.8
(2.4)
P 		36.3
(-1.9)
P 		31.2
(-3)
A 		59.6
(3)
P 		28
C 51.4
(-0.5)
P 		61.5
(1.2)
P 		37.3
(-3)
P 		71.8
(3)
P 		35
avr 54.4
(2.2) 		43.3
(-1.4) 		38.2
(-3) 		56.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 29.7
(-1.8)
P 		41.2
(2.1)
P 		43.7
(3)
P 		35.5
(0.2)
P 		40.1
(1.8)
P 		26.3
(-3)
P 		17
B 56.4
(2.3)
P 		39.5
(-0.3)
P 		21.9
(-3)
P 		34
(-1.1)
P 		60.9
(3)
P 		49.9
(1.3)
P 		39
C 51
(2.2)
P 		53.8
(3)
P 		32
(-3)
P 		31.9
(-3)
P 		40.4
(-0.7)
P 		37.1
(-1.6)
P 		22
avr 45.7
(2.4) 		44.8
(2.1) 		32.5
(-3) 		33.8
(-2.5) 		47.1
(3) 		37.8
(-0.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183095_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12455
Sequence Type Exemplar sequence
Representative Public ID R03H4.2 NCBI
Target Description R03H4.2 /REP_DB=WormBase Gene ID /WP=CE07405 /TR=Q21685 /GB=AAC48102.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072929(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072929 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-2) (srx-2) mRNA, complete cds. 11/11 None
SNAP00000020050 ENSEMBL cdna:SNAP chromosome:CEL140:V:9012063:9013346:1 11/11 None
GENEFINDER00000020060 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9012063:9013346:1 11/11 None
R03H4.2 ENSEMBL cdna:known chromosome:CEL140:V:9012063:9013346:1 gene:R03H4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9012063-9013347(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-2
Ensembl R03H4.2
Entrez Gene 187548 Entrez gene
SwissProt Q21685 EMBL-EBI
WormBase CE07405 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_505330 Serpentine Receptor, class X family member (srx-2) [Caenorhabditis elegans] gb|AAC48102.1| Serpentine receptor, class x protein 2 [Caenorhabditis elegans] 1.0E-168
blast CAE72070 Hypothetical protein CBG19156 [Caenorhabditis briggsae] 1.0E-147
blast CAE72071 Hypothetical protein CBG19157 [Caenorhabditis briggsae] 6.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505330.1 7 15-37,44-66,93-115,128-150,179-201,230-252,262-284
R03H4.2 7 15-37,44-66,93-115,128-150,179-201,230-252,262-284
SNAP00000020050 7 15-37,44-66,93-115,128-150,179-201,230-252,262-284
GENEFINDER00000020060 7 15-37,44-66,93-115,128-150,179-201,230-252,262-284
Sequence
Target Sequence 
>C. ELEGANS:183095_AT
tgcatcatcattccattctgtttcttcttaatgtatatggctcaatatggaactccctgc
tgcttttttgtttttgatcacgtggttctgtcgtactcctacaaccaaatagatggtctt
gacaattatccaaatatgttcatagatcttccattgaatactactagttcgacaattgct
acaatttgttatgctatgattgtctggacggttcggcaatcaacaaaaggaattgcttcc
tctttatctactcaacctggtagaaggtctagaaaaaacagagaagtgacttacgcaatg
caattctgctttatctcaatgttctatactttctcttggataacattccgtgttttccca
attgcaattggcgatagaggacttgaatggttcatttgtatctcagctgccgtaaccatc
aacagtagtgcaaatgctcttgtgtatcttatcagcaatcaagaagtatggcgaaatttg
aaatcgagtggcttgaacattttcaaccgtgcggcaaactcatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCATCATCATTCCATTCTGTTTCT 433 579 409 Antisense
TCAATATGGAACTCCCTGCTGCTTT 168 633 450 Antisense
TGATCACGTGGTTCTGTCGTACTCC 482 565 483 Antisense
TTCTGTCGTACTCCTACAACCAAAT 295 695 494 Antisense
TTGTCTGGACGGTTCGGCAATCAAC 297 705 608 Antisense
TCCTCTTTATCTACTCAACCTGGTA 490 591 646 Antisense
GCAATTCTGCTTTATCTCAATGTTC 423 323 708 Antisense
GGATAACATTCCGTGTTTTCCCAAT 482 509 746 Antisense
ATGGTTCATTTGTATCTCAGCTGCC 509 51 795 Antisense
TCAGCTGCCGTAACCATCAACAGTA 166 625 811 Antisense
TCAACCGTGCGGCAAACTCATCGGA 63 629 911 Antisense
Sequence Source Affymetrix Proprietary Database