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[183094_at]

Description F15A4.13 /REP_DB=WormBase Gene ID /WP=CE24902 /TR=Q9NAQ6 /GB=CAB82210.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 69      4grp_total > 24      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 3.6
(-3)
A 		14.6
(-0.9)
A 		34.6
(3)
A 		14
(-1)
A 		31
B 6.6
(-3)
A 		19.7
(1.2)
A 		25.5
(3)
A 		8.9
(-2.3)
A 		19
C 19.4
(-1.3)
A 		14.9
(-1.8)
A 		5.4
(-3)
A 		54.2
(3)
A 		49
avr 9.9
(-3) 		16.4
(-0.5) 		21.8
(1.5) 		25.7
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 26.3
(1.2)
A 		14.6
(-0.8)
A 		37.2
(3)
A 		1.7
(-3)
A 		18.5
(-0.2)
A 		13.6
(-1)
A 		36
B 22.3
(0.9)
A 		7.3
(-2.3)
A 		6.3
(-2.5)
A 		4.2
(-3)
A 		31.5
(3)
A 		31.7
(3)
A 		28
C 18.1
(-1.2)
A 		23.5
(-0.5)
A 		7.3
(-2.6)
A 		20
(-0.9)
A 		3.8
(-3)
A 		50.7
(3)
P 		47
avr 22.2
(0.5) 		15.1
(-1.3) 		16.9
(-0.9) 		8.6
(-3) 		17.9
(-0.6) 		32
(3) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 1.3
(-3)
A 		3.2
(-1.5)
A 		9
(3)
A 		2.1
(-2.4)
A 		8
B 2.1
(-2.7)
A 		4.9
(1.5)
A 		5.9
(3)
A 		1.9
(-3)
A 		4
C 6.4
(0.8)
A 		4.3
(-1)
A 		1.9
(-3)
A 		9.1
(3)
A 		7
avr 3.3
(-3) 		4.1
(-0.9) 		5.6
(3) 		4.4
(-0.1) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.8
(0.4)
A 		5.2
(0.7)
A 		8.1
(3)
A 		0.4
(-3)
A 		5.6
(1.1)
A 		3.3
(-0.7)
A 		8
B 7.8
(0.4)
A 		2.4
(-2.3)
A 		1.5
(-2.8)
A 		1.1
(-3)
A 		12.8
(3)
A 		11.8
(2.5)
A 		12
C 6.7
(-0.9)
A 		7.2
(-0.7)
A 		1.9
(-2.7)
A 		4
(-1.9)
A 		1.2
(-3)
A 		17
(3)
P 		16
avr 6.4
(0.1) 		4.9
(-0.9) 		3.8
(-1.7) 		1.8
(-3) 		6.5
(0.2) 		10.7
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183094_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3224
Sequence Type Exemplar sequence
Representative Public ID F15A4.13 NCBI
Target Description F15A4.13 /REP_DB=WormBase Gene ID /WP=CE24902 /TR=Q9NAQ6 /GB=CAB82210.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064261(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064261 NCBI Caenorhabditis elegans F15A4.13 (F15A4.13) mRNA, complete cds. 11/11 None
F15A4.13 ENSEMBL cdna:known chromosome:CEL140:II:12482834:12484130:1 gene:F15A4.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12482830-12484127(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15A4.13
Entrez Gene 184516 Entrez gene
SwissProt Q9NAQ6 EMBL-EBI
WormBase CE24902 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB82210 Hypothetical protein F15A4.13 [Caenorhabditis elegans] ref|NP_496662.1| F15A4.13 [Caenorhabditis elegans] 0.0
blast AAB65271 Hypothetical protein F29A7.1 [Caenorhabditis elegans] ref|NP_494354.1| F29A7.1 [Caenorhabditis elegans] 1.0E-21
blast AAC67452 Hypothetical protein F53C3.2 [Caenorhabditis elegans] ref|NP_494693.1| F53C3.2 [Caenorhabditis elegans] 8.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 0.0015
Sequence
Target Sequence 
>C. ELEGANS:183094_AT
aatagaacttggtttcctcgcgatttattccgaattttcaacgcacaatctttttattgt
gtaattgatttcattttgaaaattttaagaagcttccaatacccggaaagtcttacaact
tgtaagggaaaatcgctaggaaggaagcctttaaatacaatttttatattgaatttcaaa
agtgtgaagtattacggaagacatcaatttcaattaacgcttaatcaacttttggcaatg
aacatttcaactttgaaattactagattctgcaatatccagtaaaaatttgaatttcttc
ttaaaacattggctaaatggctctaacaaacggcttgaagtgctagaaatttttggattg
aacgcctatagccccacaataatctttaaaaatgttgcttaccaagtgatcctcgaagat
gaaatctttagcatttacaatgaagtattcacgtttggatatgaaattgaaaggagttgc
gatgaaacaagggcagcgatttttattaactcaatgccggaagtttctcactattgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAGAACTTGGTTTCCTCGCGATT 402 169 430 Antisense
GTTTCCTCGCGATTTATTCCGAATT 223 451 441 Antisense
TCCGAATTTTCAACGCACAATCTTT 517 593 458 Antisense
GAAGCTTCCAATACCCGGAAAGTCT 151 337 518 Antisense
ATTAACGCTTAATCAACTTTTGGCA 558 5 642 Antisense
ATGGCTCTAACAAACGGCTTGAAGT 150 53 746 Antisense
TTGGATTGAACGCCTATAGCCCCAC 324 705 782 Antisense
GCCTATAGCCCCACAATAATCTTTA 364 281 793 Antisense
GTTGCTTACCAAGTGATCCTCGAAG 490 435 823 Antisense
AGGGCAGCGATTTTTATTAACTCAA 234 59 919 Antisense
AATGCCGGAAGTTTCTCACTATTGT 352 167 942 Antisense
Sequence Source Affymetrix Proprietary Database