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[183093_at] 7TM chemoreceptor, srsx family

Description F38E1.8 /REP_DB=WormBase Gene ID /WP=CE04526 /TR=Q20156 /GB=AAA83471.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 10      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 1.1
(-3)
A 		9.8
(-1.9)
A 		1.5
(-2.9)
A 		48.5
(3)
A 		47
B 3.2
(3)
A 		1.2
(-2.5)
A 		1
(-3)
A 		2.7
(1.6)
A 		2
C 0.9
(-3)
A 		4.6
(-2.5)
A 		0.5
(-3)
A 		54.1
(3)
A 		54
avr 1.7
(-2.9) 		5.2
(-2.3) 		1
(-3) 		35.1
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 13.4
(2.5)
A 		8.2
(0.3)
A 		0.6
(-3)
A 		2.1
(-2.4)
A 		14.6
(3)
A 		7.8
(0.1)
A 		14
B 3.1
(-1.9)
A 		2
(-2.4)
A 		0.9
(-3)
A 		3.3
(-1.8)
A 		1.2
(-2.8)
A 		12.8
(3)
A 		12
C 6.4
(-2.2)
A 		1.2
(-2.9)
A 		0.4
(-3)
A 		44.5
(3)
A 		4.5
(-2.4)
A 		1.1
(-2.9)
A 		44
avr 7.6
(-0.4) 		3.8
(-1.8) 		0.6
(-3) 		16.6
(3) 		6.8
(-0.7) 		7.2
(-0.5) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 0.4
(-3)
A 		2.1
(-1.5)
A 		0.4
(-3)
A 		7.1
(3)
A 		7
B 1
(3)
A 		0.3
(-2.3)
A 		0.2
(-3)
A 		0.6
(-0)
A 		1
C 0.3
(-2.9)
A 		1.3
(-2.3)
A 		0.2
(-3)
A 		9.1
(3)
A 		9
avr 0.6
(-2.7) 		1.2
(-2) 		0.3
(-3) 		5.6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.5
(0.3)
A 		2.9
(0.9)
A 		0.1
(-3)
A 		0.5
(-2.4)
A 		4.4
(3)
A 		1.9
(-0.5)
A 		4
B 1.1
(-1.8)
A 		0.7
(-2.3)
A 		0.2
(-3)
A 		0.9
(-2.1)
A 		0.5
(-2.6)
A 		4.8
(3)
A 		5
C 2.4
(-1.4)
A 		0.4
(-2.8)
A 		0.1
(-3)
A 		9
(3)
A 		1.5
(-2.1)
A 		0.4
(-2.8)
A 		9
avr 2
(0.4) 		1.3
(-0.9) 		0.1
(-3) 		3.5
(3) 		2.1
(0.5) 		2.4
(1.1) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183093_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12444
Sequence Type Exemplar sequence
Representative Public ID F38E1.8 NCBI
Target Description F38E1.8 /REP_DB=WormBase Gene ID /WP=CE04526 /TR=Q20156 /GB=AAA83471.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072752(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072752 NCBI Caenorhabditis elegans Serpentine Receptor, class SX family member (srsx-22) (srsx-22) mRNA, complete cds. 9/11 None
F38E1.8 ENSEMBL cdna:known chromosome:CEL140:V:8353552:8355675:1 gene:F38E1.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000006037 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8353552-8355676(+) 94.58 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srsx family
Gene Symbol srsx-22
Ensembl F38E1.8
Entrez Gene 185465 Entrez gene
SwissProt Q20156 EMBL-EBI
WormBase CE38183 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83471 Serpentine receptor, class sx protein 22 [Caenorhabditis elegans] ref|NP_505153.2| Serpentine Receptor, class SX family member (srsx-22) [Caenorhabditis elegans] 1.0E-172
blast AAA83471 Serpentine receptor, class sx protein 22 [Caenorhabditis elegans] ref|NP_505153.2| Serpentine Receptor, class SX family member (srsx-22) [Caenorhabditis elegans] 1.0E-106
blast AAB52300 Serpentine receptor, class sx protein 24 [Caenorhabditis elegans] ref|NP_504887.1| Serpentine Receptor, class SX family member (srsx-24) [Caenorhabditis elegans] 1.0E-74
blast CAB60603 Hypothetical protein Y62E10A.4 [Caenorhabditis elegans] ref|NP_502569.1| Serpentine Receptor, class SX family member (srsx-25) [Caenorhabditis elegans] 6.0E-63
blast AAB52300 Serpentine receptor, class sx protein 24 [Caenorhabditis elegans] ref|NP_504887.1| Serpentine Receptor, class SX family member (srsx-24) [Caenorhabditis elegans] 6.0E-49
blast CAB60603 Hypothetical protein Y62E10A.4 [Caenorhabditis elegans] ref|NP_502569.1| Serpentine Receptor, class SX family member (srsx-25) [Caenorhabditis elegans] 1.0E-37
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505153.2 7 11-30,43-65,80-102,122-144,164-186,213-235,245-267
F38E1.8 5 10-32,45-67,115-137,158-180,190-212
Sequence
Target Sequence 
>C. ELEGANS:183093_AT
gcattctcattgcaattatggcattttttaattttatattttgtatttatctgagtatga
ttggtctttttattggtcttgatagactgttttcaggttttgattacatttgtatgttaa
atgttgatttcagatattctacaattccagtgtatcagtatgaagatattgttttaacgg
tttgttacccaactacatccatgtatggagttccattaagtatatggttgggaatgaatt
tctcgattgctgttgtagttatatttgtgtatggaggagctcatatcaaatgccggaaac
tcaaaaacgcaaatagtcatgtgaaactggtggaatcggttaatcgaattttgaaatcta
tgatagttgttatttctctttacgtttgcacttggtttctagcattacttgttttaaaaa
tggataatccgtttgtaatagctcttgaaagtgtaactggatcgcttatacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTCTCATTGCAATTATGGCATT 678 307 140 Antisense
ATTGGTCTTTTTATTGGTCTTGATA 560 3 199 Antisense
GACTGTTTTCAGGTTTTGATTACAT 39 377 224 Antisense
TTTGTTACCCAACTACATCCATGTA 323 665 320 Antisense
GAATTTCTCGATTGCTGTTGTAGTT 634 325 375 Antisense
GGAGGAGCTCATATCAAATGCCGGA 622 515 412 Antisense
GATAGTTGTTATTTCTCTTTACGTT 518 425 501 Antisense
TTCTCTTTACGTTTGCACTTGGTTT 439 691 513 Antisense
GCACTTGGTTTCTAGCATTACTTGT 149 317 527 Antisense
GATAATCCGTTTGTAATAGCTCTTG 524 421 562 Antisense
AGTGTAACTGGATCGCTTATACTTT 180 59 589 Antisense
Sequence Source Affymetrix Proprietary Database