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[183092_at]

Description F15H10.7 /REP_DB=WormBase Gene ID /WP=CE05644 /TR=Q19486 /GB=CAA98260.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 29      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 64
(-0.1)
A 		66.5
(0.1)
A 		29
(-3)
A 		101.4
(3)
P 		72
B 124.4
(3)
A 		33.5
(-1.9)
A 		14.2
(-3)
A 		39.1
(-1.6)
A 		110
C 106
(0.8)
P 		70.7
(-0.6)
A 		11.7
(-3)
A 		160.9
(3)
A 		149
avr 98.1
(2.8) 		56.9
(-0.2) 		18.3
(-3) 		100.5
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 96.9
(0)
A 		82.7
(-1.9)
P 		118.8
(3)
P 		103.8
(1)
A 		96.5
(-0)
A 		74.3
(-3)
A 		45
B 144.1
(3)
P 		102.2
(0.6)
A 		82.6
(-0.5)
A 		110.3
(1.1)
A 		94.4
(0.1)
A 		40
(-3)
A 		104
C 153.1
(3)
P 		142.4
(2.5)
M 		105.3
(0.9)
A 		115.9
(1.3)
A 		18
(-3)
A 		52.4
(-1.5)
A 		135
avr 131.4
(3) 		109.1
(1.2) 		102.2
(0.7) 		110
(1.3) 		69.6
(-1.9) 		55.6
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 23.3
(3)
A 		14.4
(-0.4)
A 		7.6
(-3)
A 		14.8
(-0.2)
P 		16
B 39.7
(3)
A 		8.3
(-2.2)
A 		3.3
(-3)
A 		8.3
(-2.2)
A 		36
C 35.1
(3)
P 		20.3
(0.1)
A 		4.1
(-3)
A 		27.1
(1.5)
A 		31
avr 32.7
(3) 		14.3
(-1) 		5
(-3) 		16.7
(-0.5) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 17.9
(-3)
A 		29.4
(3)
P 		25.9
(1.2)
P 		26.3
(1.4)
A 		29.1
(2.8)
A 		18.1
(-2.9)
A 		12
B 50.1
(3)
P 		34
(0.3)
A 		20.1
(-2.1)
A 		29.2
(-0.6)
A 		38.3
(1)
A 		14.9
(-3)
A 		35
C 56.8
(3)
P 		43.4
(1.4)
M 		26.8
(-0.5)
A 		23.3
(-0.9)
A 		5.8
(-3)
A 		17.5
(-1.6)
A 		51
avr 41.6
(3) 		35.6
(1.5) 		24.3
(-1.2) 		26.3
(-0.7) 		24.4
(-1.2) 		16.8
(-3) 		25
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183092_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12452
Sequence Type Exemplar sequence
Representative Public ID F15H10.7 NCBI
Target Description F15H10.7 /REP_DB=WormBase Gene ID /WP=CE05644 /TR=Q19486 /GB=CAA98260.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073273(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073273 NCBI Caenorhabditis elegans F15H10.7 (F15H10.7) mRNA, complete cds. 11/11 None
SNAP00000002811 ENSEMBL cdna:SNAP chromosome:CEL140:V:10405848:10408944:-1 11/11 None
GENEFINDER00000002825 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:10405848:10412602:-1 11/11 None
F15H10.7 ENSEMBL cdna:known chromosome:CEL140:V:10405787:10408944:-1 gene:F15H10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10405847-10408944(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F15H10.7
Entrez Gene 184555 Entrez gene
SwissProt Q19486 EMBL-EBI
WormBase CE05644 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628861_AT dm
DROSGENOME1:148402_AT dm
Protein Similarities
Method ID Description E-Value
blast CAA98260 Hypothetical protein F15H10.7 [Caenorhabditis elegans] ref|NP_505674.1| F15H10.7 [Caenorhabditis elegans] 0.0
blast CAE64822 Hypothetical protein CBG09618 [Caenorhabditis briggsae] 0.0
blast CAB00102 Hypothetical protein F10C2.3 [Caenorhabditis elegans] emb|CAB04082.2| Hypothetical protein F10C2.3 [Caenorhabditis elegans] ref|NP_506015.2| F10C2.3 [Caenorhabditis elegans] 1.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Pfam IPR004245 EMBL-EBI Protein of unknown function DUF229 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_505674.1 1 13-35
F15H10.7 1 13-35
SNAP00000002811 1 13-35
GENEFINDER00000002825 2 4-21,56-78
Sequence
Target Sequence 
>C. ELEGANS:183092_AT
agttcgatgtaaatgactccctccgaaaaattgctactggaaaagtcggtgaaaaatgga
ctcaaactgatcggaaacgcagttattcctattttgatcccttcccaaaacgaataggat
gttatgaagcaggcattccatcagacttttgtccgtgtttctcagagatagagatcccga
aaagtgaagcaaaagaagcggctgtagagctaatgcgcatcgtgaatgacttgctggaaa
ataccgaaaaaactgaagaatatgaacctgattcaaaagaattgacagagtatatgtgta
ctccaatggaaattcagaatgtcgagttttcatcagtccgtttgcctatgttgagtgttc
ttaaagacgtaaaatctgaagacacgcctttgcagtcattttcattgcaatatcacgtgg
tggttcgtgccaaagcaccaagtaatgctcttctcgagtcaacattggaacacaatctaa
aaacaaatacatggtcatcattaggggaagttgaacggaataacaaatacggtaatacct
ctttttgtgtga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCGATGTAAATGACTCCCTCCG 283 65 1391 Antisense
GACTCCCTCCGAAAAATTGCTACTG 265 371 1405 Antisense
CAGTTATTCCTATTTTGATCCCTTC 217 207 1470 Antisense
CAGGCATTCCATCAGACTTTTGTCC 67 209 1520 Antisense
ACTTTTGTCCGTGTTTCTCAGAGAT 147 103 1535 Antisense
GGCTGTAGAGCTAATGCGCATCGTG 635 539 1590 Antisense
GAATGTCGAGTTTTCATCAGTCCGT 38 333 1707 Antisense
CAGTCCGTTTGCCTATGTTGAGTGT 701 207 1724 Antisense
AAGACACGCCTTTGCAGTCATTTTC 422 153 1769 Antisense
GTAATGCTCTTCTCGAGTCAACATT 203 463 1832 Antisense
TACGGTAATACCTCTTTTTGTGTGA 125 567 1918 Antisense
Sequence Source Affymetrix Proprietary Database