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[183090_s_at]

Description ZK742.4 /REP_DB=WormBase Gene ID /WP=CE07640 /TR=Q23091 /GB=AAB04983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 48      6grp_total > 48      4grp_total > 46      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 399
1 2 3 4 range
A 572.5
(3)
P 		256.8
(-1.7)
P 		196.5
(-2.7)
M 		173.7
(-3)
A 		399
B 505.1
(3)
P 		260.8
(-1.7)
P 		202.4
(-2.8)
M 		189.9
(-3)
A 		315
C 554.9
(3)
P 		229.1
(-2.2)
A 		230.9
(-2.2)
P 		182.1
(-3)
M 		373
avr 544.2
(3) 		248.9
(-1.9) 		209.9
(-2.5) 		181.9
(-3) 		362

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 623
1 2 3 4 5 6 range
A 570.5
(2)
P 		351.1
(-0.7)
P 		274.3
(-1.6)
P 		160.7
(-3)
A 		270.5
(-1.6)
P 		648.4
(3)
P 		488
B 747.6
(3)
P 		385.2
(-0.5)
P 		206
(-2.2)
P 		124.7
(-3)
A 		259.5
(-1.7)
P 		723.6
(2.8)
P 		623
C 681.6
(3)
P 		330.8
(-1.1)
P 		246.8
(-2.1)
M 		168.5
(-3)
P 		275.5
(-1.7)
P 		624.1
(2.3)
P 		513
avr 666.6
(3) 		355.7
(-0.6) 		242.4
(-1.9) 		151.3
(-3) 		268.5
(-1.6) 		665.4
(3) 		515
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 208.5
(3)
P 		55.8
(-2)
P 		51.4
(-2.1)
M 		25.4
(-3)
A 		183
B 161.1
(3)
P 		64.4
(-1.8)
P 		46.9
(-2.7)
M 		40.5
(-3)
A 		121
C 183.7
(3)
P 		65.9
(-1.6)
A 		80.5
(-1)
P 		30.7
(-3)
M 		153
avr 184.4
(3) 		62
(-1.8) 		59.6
(-1.9) 		32.2
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 105.2
(0.3)
P 		124.9
(1.3)
P 		59.7
(-2)
P 		40.8
(-3)
A 		81.6
(-0.9)
P 		157.9
(3)
P 		117
B 260.1
(2.8)
P 		128.2
(-0.6)
P 		50
(-2.6)
P 		33
(-3)
A 		105.4
(-1.2)
P 		269.8
(3)
P 		237
C 252.6
(3)
P 		100.9
(-1.2)
P 		62.8
(-2.2)
M 		33.9
(-3)
P 		89.1
(-1.5)
P 		208.9
(1.8)
P 		219
avr 206
(2.8) 		118
(-0.2) 		57.5
(-2.3) 		35.9
(-3) 		92
(-1.1) 		212.2
(3) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183090_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12443
Sequence Type Exemplar sequence
Representative Public ID ZK742.4 NCBI
Target Description ZK742.4 /REP_DB=WormBase Gene ID /WP=CE07640 /TR=Q23091 /GB=AAB04983.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072614(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072614 NCBI Caenorhabditis elegans ZK742.4 (ZK742.4) mRNA, complete cds. 11/11 None
SNAP00000028065 ENSEMBL cdna:SNAP chromosome:CEL140:V:7812865:7814351:-1 11/11 None
GENEFINDER00000028074 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7812865:7814351:-1 11/11 None
ZK742.4 ENSEMBL cdna:known chromosome:CEL140:V:7812865:7814351:-1 gene:ZK742.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7812865-7814352(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK742.4
Entrez Gene 179159 Entrez gene
SwissProt Q23091 EMBL-EBI
WormBase CE07640 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16491 oxidoreductase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB04983 Hypothetical protein ZK742.4 [Caenorhabditis elegans] ref|NP_505015.1| ZK742.4 [Caenorhabditis elegans] 0.0
blast CAE73179 Hypothetical protein CBG20577 [Caenorhabditis briggsae] 0.0
blast CAE73180 Hypothetical protein CBG20578 [Caenorhabditis briggsae] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR001155 EMBL-EBI NADH:flavin oxidoreductase/NADH oxidase 2.5E-7
Sequence
Target Sequence 
>C. ELEGANS:183090_S_AT
tgaagctgaactctgccgattaccagaacaccttcaccaacgatgaagtcggtcgtcttt
gtgagatcttcgacgagactggttacgactttgttgaattgactggaggtcaaatggaac
aatgtgttgaagaggctcaacaaagagcaagcactatcgcgcgtgaaaattatttccttc
aatttatcgagactgctgcaagatcaatgagaaagactgttgtctatattactggaggtt
ggcaaactgcatcagcgatggtcaatgctgtgaagctcaacgttacacaaggaataggtt
ttgctcgagctgctgctggtgagccagatttgcctcgtaaattgctaagtggcgtagcac
attccactttggacaataaattctctccagctgattacttcacttccaaacatgctgccc
actttcagatgaaaacaatggctgcacgatcgataaatgatgtcgtcagatccacggacg
gagttcccga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAGCTGAACTCTGCCGATTACCA 24 573 734 Antisense
GTCGGTCGTCTTTGTGAGATCTTCG 274 473 781 Antisense
GACGAGACTGGTTACGACTTTGTTG 548 379 805 Antisense
AAGAGCAAGCACTATCGCGCGTGAA 661 153 876 Antisense
GAATAGGTTTTGCTCGAGCTGCTGC 228 325 1025 Antisense
CTGGTGAGCCAGATTTGCCTCGTAA 578 239 1049 Antisense
GTGGCGTAGCACATTCCACTTTGGA 350 491 1082 Antisense
TAAATTCTCTCCAGCTGATTACTTC 403 641 1110 Antisense
TTACTTCACTTCCAAACATGCTGCC 118 683 1128 Antisense
AACATGCTGCCCACTTTCAGATGAA 694 137 1142 Antisense
TCAGATCCACGGACGGAGTTCCCGA 583 623 1199 Antisense
Sequence Source Affymetrix Proprietary Database