[Home] | [Total List]

[183089_at]

Description C15C7.5 /REP_DB=WormBase Gene ID /WP=CE03991 /TR=Q18012 /GB=AAK39168.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 70      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 45      6grp_total > 81      4grp_total > 57      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1935
1 2 3 4 range
A 1348.5
(-1.8)
P 		2525.7
(2.7)
P 		2607.3
(3)
P 		1022.1
(-3)
P 		1585
B 1375.3
(-1.1)
P 		2193.1
(1.9)
P 		2497.1
(3)
P 		842.5
(-3)
P 		1655
C 1599.9
(-0.7)
P 		2372.1
(1.7)
P 		2777.3
(3)
P 		871.3
(-3)
P 		1906
avr 1441.2
(-1.1) 		2363.6
(2.1) 		2627.2
(3) 		912
(-3) 		1715

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1656
1 2 3 4 5 6 range
A 1881.7
(-1.7)
P 		2162.5
(-0.5)
P 		1988.4
(-1.2)
P 		3040.8
(3)
P 		2173
(-0.5)
P 		1548
(-3)
P 		1493
B 1721.3
(-0.8)
P 		1805.9
(-0.3)
P 		2120.5
(1.8)
P 		2305.9
(3)
P 		2051.2
(1.3)
P 		1385
(-3)
P 		921
C 2319.5
(0.8)
P 		1780.7
(-1.9)
P 		2170.5
(0)
P 		2778.2
(3)
P 		2556.1
(1.9)
P 		1548.7
(-3)
P 		1230
avr 1974.2
(-0.6) 		1916.4
(-0.9) 		2093.1
(-0) 		2708.3
(3) 		2260.1
(0.8) 		1493.9
(-3) 		1214
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 821
1 2 3 4 range
A 491
(0.9)
P 		548.3
(1.5)
P 		681.6
(3)
P 		149.6
(-3)
P 		532
B 438.6
(0.9)
P 		541.6
(2.4)
P 		578.6
(3)
P 		179.5
(-3)
P 		399
C 529.6
(-0.2)
P 		682
(0.9)
P 		968
(3)
P 		146.9
(-3)
P 		821
avr 486.4
(0.4) 		590.6
(1.4) 		742.7
(3) 		158.7
(-3) 		584

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 513
1 2 3 4 5 6 range
A 346.9
(-3)
P 		769.1
(3)
P 		433
(-1.8)
P 		771.2
(3)
P 		655.7
(1.4)
P 		376.9
(-2.6)
P 		424
B 598.9
(-1.4)
P 		601.1
(-1.4)
P 		514.9
(-3)
P 		610.8
(-1.2)
P 		833.4
(3)
P 		516.5
(-3)
P 		319
C 859.7
(3)
P 		543.4
(-2.6)
P 		552.4
(-2.4)
P 		558.7
(-2.3)
P 		827.1
(2.4)
P 		518.4
(-3)
P 		341
avr 601.8
(-0.4) 		637.9
(0.3) 		500.1
(-2.4) 		646.9
(0.5) 		772.1
(3) 		470.6
(-3) 		302
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183089_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18419
Sequence Type Exemplar sequence
Representative Public ID C15C7.5 NCBI
Target Description C15C7.5 /REP_DB=WormBase Gene ID /WP=CE03991 /TR=Q18012 /GB=AAK39168.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076141 NCBI Caenorhabditis elegans C15C7.5 (C15C7.5) mRNA, complete cds. 11/11 None
SNAP00000025244 ENSEMBL cdna:SNAP chromosome:CEL140:X:3151496:3152443:-1 11/11 None
GENEFINDER00000025257 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3151496:3152443:-1 11/11 None
C15C7.5 ENSEMBL cdna:known chromosome:CEL140:X:3151136:3152452:-1 gene:C15C7.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3151495-3152443(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15C7.5
Entrez Gene 180605 Entrez gene
SwissProt Q18012 EMBL-EBI
WormBase CE03991 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39168 Hypothetical protein C15C7.5 [Caenorhabditis elegans] ref|NP_508542.1| C15C7.5 [Caenorhabditis elegans] 5.0E-49
blast CAE68386 Hypothetical protein CBG14145 [Caenorhabditis briggsae] 2.0E-47
blast AAK39168 Hypothetical protein C15C7.5 [Caenorhabditis elegans] ref|NP_508542.1| C15C7.5 [Caenorhabditis elegans] 5.0E-47
blast CAE68386 Hypothetical protein CBG14145 [Caenorhabditis briggsae] 2.0E-45
Sequence
Target Sequence 
>C. ELEGANS:183089_AT
gagcctattgtcaagatgcgcgaccgcaatgtcaacgctgctgcacattctgcgttggct
cgtggaattgaggcactcaacgaaggagaagtgaccgaggagacggaagaaattcgcaag
ctggacacccagcttgatcatcttaatgactacatgtctaagatggaagagcgtctgaag
gcacacaacgacagaatgatggagacgttgaagcagcagaaggaagagcgcgaaaagaga
cgtcgcagcttccacgagcgtatgtcccaaaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCCTATTGTCAAGATGCGCGACC 208 385 37 Antisense
AGATGCGCGACCGCAATGTCAACGC 676 65 50 Antisense
AATGTCAACGCTGCTGCACATTCTG 706 163 64 Antisense
ACATTCTGCGTTGGCTCGTGGAATT 283 105 81 Antisense
GGCTCGTGGAATTGAGGCACTCAAC 486 537 93 Antisense
GACACCCAGCTTGATCATCTTAATG 496 367 160 Antisense
GGAAGAGCGTCTGAAGGCACACAAC 523 531 201 Antisense
GAAGGCACACAACGACAGAATGATG 441 333 213 Antisense
GATGGAGACGTTGAAGCAGCAGAAG 186 407 234 Antisense
CGAAAAGAGACGTCGCAGCTTCCAC 169 253 267 Antisense
TTCCACGAGCGTATGTCCCAAAATC 707 695 286 Antisense
Sequence Source Affymetrix Proprietary Database