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[183087_at]

Description T14B4.2 /REP_DB=WormBase Gene ID /WP=CE04952 /TR=Q22483 /GB=AAK31558.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 53      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 65      6grp_total > 62      4grp_total > 49      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1188
1 2 3 4 range
A 877.4
(-3)
P 		2065.1
(3)
P 		1826.7
(1.8)
P 		1100
(-1.9)
P 		1188
B 1082.8
(-3)
P 		1748
(3)
P 		1747.9
(3)
P 		1121.7
(-2.6)
P 		665
C 921.1
(-3)
P 		1589.8
(3)
P 		1529.7
(2.5)
P 		1146
(-1)
P 		669
avr 960.4
(-3) 		1801
(3) 		1701.4
(2.3) 		1122.6
(-1.8) 		841

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1004
1 2 3 4 5 6 range
A 835.6
(-3)
P 		1178.5
(0.4)
P 		1448.6
(3)
P 		1293.3
(1.5)
P 		1201.1
(0.6)
P 		1050.1
(-0.9)
P 		613
B 1027.4
(-3)
P 		1377.2
(-0.4)
P 		1840
(3)
P 		1267.8
(-1.2)
P 		1270
(-1.2)
P 		1210.9
(-1.6)
P 		813
C 996.6
(-2.1)
P 		1624
(2)
P 		1195.6
(-0.8)
P 		1783
(3)
P 		859.3
(-3)
P 		1337.3
(0.1)
P 		924
avr 953.2
(-3) 		1393.2
(1.9) 		1494.7
(3) 		1448
(2.5) 		1110.1
(-1.3) 		1199.4
(-0.3) 		542
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 372
1 2 3 4 range
A 319.5
(0)
P 		448.3
(2.4)
P 		477.5
(3)
P 		161
(-3)
P 		317
B 345.3
(0.3)
P 		431.7
(3)
P 		405
(2.2)
P 		239
(-3)
P 		193
C 304.9
(-1)
P 		457.1
(1.7)
P 		533.2
(3)
P 		193.2
(-3)
P 		340
avr 323.2
(-0.3) 		445.7
(2.4) 		471.9
(3) 		197.7
(-3) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 362
1 2 3 4 5 6 range
A 154
(-3)
P 		419.1
(3)
P 		315.5
(0.7)
P 		328
(0.9)
P 		362.4
(1.7)
P 		255.7
(-0.7)
P 		265
B 357.5
(-2.3)
P 		458.4
(1.1)
P 		446.8
(0.7)
P 		335.8
(-3)
P 		516
(3)
P 		451.6
(0.9)
P 		180
C 369.4
(-0.5)
P 		495.5
(3)
P 		304.3
(-2.3)
P 		358.6
(-0.8)
P 		278
(-3)
P 		447.7
(1.7)
P 		218
avr 293.6
(-3) 		457.7
(3) 		355.5
(-0.7) 		340.8
(-1.3) 		385.5
(0.4) 		385
(0.3) 		164
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183087_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4848
Sequence Type Exemplar sequence
Representative Public ID T14B4.2 NCBI
Target Description T14B4.2 /REP_DB=WormBase Gene ID /WP=CE04952 /TR=Q22483 /GB=AAK31558.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062973(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062973 NCBI Caenorhabditis elegans T14B4.2 (T14B4.2) mRNA, complete cds. 11/11 None
SNAP00000000081 ENSEMBL cdna:SNAP chromosome:CEL140:II:6736140:6736657:1 11/11 None
T14B4.2 ENSEMBL cdna:known chromosome:CEL140:II:6736139:6736729:1 gene:T14B4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6736136-6736654(+) 99.05 100.0
Public Domain and Genome References
Gene Title
Ensembl T14B4.2
Entrez Gene 188492 Entrez gene
SwissProt Q22483 EMBL-EBI
WormBase CE04952 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1601131_S_AT similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) cfa
CANINE:1599339_AT similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) cfa
CANINE:1597890_S_AT similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) cfa
CANINE_2:CFA.9884.1.A1_S_AT similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) cfa
CANINE_2:CFA.9884.1.A1_X_AT similar to 28S ribosomal protein S18c, mitochondrial precursor (MRP-S18-c) (Mrps18c) (MRP-S18-1) cfa
DROSOPHILA_2:1628621_AT mitochondrial ribosomal protein S18C dm
DROSGENOME1:150886_AT mitochondrial ribosomal protein S18C dm
CHICKEN:GGA.6044.1.S1_A_AT mitochondrial ribosomal protein S18C gga
HG-U133_PLUS_2:220103_S_AT mitochondrial ribosomal protein S18C hs
HG-U133A:220103_S_AT mitochondrial ribosomal protein S18C hs
HG-U133A_2:220103_S_AT mitochondrial ribosomal protein S18C hs
HU35KSUBA:AA090608_AT mitochondrial ribosomal protein S18C hs
HU35KSUBA:HUM_ALU_AT mitochondrial ribosomal protein S18C hs
HU35KSUBB:HUM_ALU_AT mitochondrial ribosomal protein S18C hs
HU35KSUBC:HUM_ALU_AT mitochondrial ribosomal protein S18C hs
HU35KSUBD:HUM_ALU_AT mitochondrial ribosomal protein S18C hs
HUGENEFL:HUM_ALU_AT mitochondrial ribosomal protein S18C hs
HC-G110:HUM_ALU_AT mitochondrial ribosomal protein S18C hs
HU35KSUBD:RC_N49091_AT mitochondrial ribosomal protein S18C hs
U133_X3P:G7705629_3P_A_AT mitochondrial ribosomal protein S18C hs
U133_X3P:HS.3385.2.A1_3P_A_AT mitochondrial ribosomal protein S18C hs
U133_X3P:HS.3385.0.A2_3P_AT mitochondrial ribosomal protein S18C hs
HG-U133_PLUS_2:222948_S_AT mitochondrial ribosomal protein S18C hs
HG-U133B:222948_S_AT mitochondrial ribosomal protein S18C hs
HG-U133_PLUS_2:228019_S_AT mitochondrial ribosomal protein S18C hs
HG-U133B:228019_S_AT mitochondrial ribosomal protein S18C hs
HG-U95B:44697_AT mitochondrial ribosomal protein S18C hs
MG-U74BV2:107047_AT mitochondrial ribosomal protein S18C mm
MG-U74BV2:164462_F_AT mitochondrial ribosomal protein S18C mm
MOE430A:1427901_AT mitochondrial ribosomal protein S18C mm
MOUSE430A_2:1427901_AT mitochondrial ribosomal protein S18C mm
MOUSE430_2:1427901_AT mitochondrial ribosomal protein S18C mm
MOE430B:1445269_AT Mitochondrial ribosomal protein S18C, mRNA (cDNA clone MGC:41331 IMAGE:1196057) mm
MOUSE430_2:1445269_AT Mitochondrial ribosomal protein S18C, mRNA (cDNA clone MGC:41331 IMAGE:1196057) mm
MU19KSUBC:TC35101_AT Mitochondrial ribosomal protein S18C, mRNA (cDNA clone MGC:41331 IMAGE:1196057) mm
MU19KSUBC:TC40804_AT Mitochondrial ribosomal protein S18C, mRNA (cDNA clone MGC:41331 IMAGE:1196057) mm
RG-U34C:RC_AI071605_AT mitochondrial ribosomal protein S18C (predicted) rn
RG-U34C:RC_AI071722_AT mitochondrial ribosomal protein S18C (predicted) rn
RAE230B:1380447_A_AT mitochondrial ribosomal protein S18C (predicted) rn
RAT230_2:1380447_A_AT mitochondrial ribosomal protein S18C (predicted) rn
RAE230B:1379378_AT mitochondrial ribosomal protein S18C (predicted) rn
RAT230_2:1379378_AT mitochondrial ribosomal protein S18C (predicted) rn
RAE230B:1382418_AT Mitochondrial ribosomal protein S18C (predicted) rn
RAT230_2:1382418_AT Mitochondrial ribosomal protein S18C (predicted) rn
RG-U34B:RC_AA850208_AT Mitochondrial ribosomal protein S18C (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_495374 T14B4.2 [Caenorhabditis elegans] gb|AAK31558.1| Hypothetical protein T14B4.2 [Caenorhabditis elegans] 3.0E-67
blast CAE66025 Hypothetical protein CBG11219 [Caenorhabditis briggsae] 8.0E-57
blast EAA10088 ENSANGP00000012972 [Anopheles gambiae str. PEST] ref|XP_314899.2| ENSANGP00000012972 [Anopheles gambiae str. PEST] 8.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001648 EMBL-EBI Ribosomal protein S18 4.9E-4
Sequence
Target Sequence 
>C. ELEGANS:183087_AT
atcggcgtcatcgttggtgcgaagtttcataaggccgcagacattcaggttatgtagctc
cagttcaaccacgcagggatctccttcggttagctctgacgatgagcccgtaattttgga
gaataatccatacacaaaagagccacggaagtccttcttgtgctcaactggtgttgaact
cgattacaaaaattcgagacttttgcagcaatttgtttccacattctctgggcgtgtata
cgatcgtcacatcactggactttgcgacgagaacaagaagaagctgattgaagcaatcgc
gaaatcgcgtcgtgccgggttcatgccaatcttcgtaaaggatccaaagtacaccagaga
cccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCGGCGTCATCGTTGGTGCGAAGT 485 33 21 Antisense
CATAAGGCCGCAGACATTCAGGTTA 219 209 48 Antisense
TTCAGGTTATGTAGCTCCAGTTCAA 629 687 64 Antisense
TCTCCTTCGGTTAGCTCTGACGATG 202 611 100 Antisense
AAGAGCCACGGAAGTCCTTCTTGTG 281 153 158 Antisense
GCAGCAATTTGTTTCCACATTCTCT 410 313 225 Antisense
TTCCACATTCTCTGGGCGTGTATAC 578 699 237 Antisense
ACGATCGTCACATCACTGGACTTTG 324 93 260 Antisense
GCAATCGCGAAATCGCGTCGTGCCG 523 321 313 Antisense
CGGGTTCATGCCAATCTTCGTAAAG 188 245 336 Antisense
GGATCCAAAGTACACCAGAGACCCG 210 513 360 Antisense
Sequence Source Affymetrix Proprietary Database